miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 3' -50.9 NC_005264.1 + 31053 0.66 0.995783
Target:  5'- cGGCUGCGuUGCGGACgGCaggCGAGCGa -3'
miRNA:   3'- aUUGGUGCuACGCUUG-CGca-GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 5261 0.66 0.995783
Target:  5'- -cGCCGgGAgGCGAGuCGCGgcCGGACGg -3'
miRNA:   3'- auUGGUgCUaCGCUU-GCGCa-GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 150080 0.66 0.995783
Target:  5'- cGGCUGCGuUGCGGACgGCaggCGAGCGa -3'
miRNA:   3'- aUUGGUGCuACGCUUG-CGca-GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 127089 0.66 0.995783
Target:  5'- --cCCACGucGCGGcCGCaGUCGGGCAc -3'
miRNA:   3'- auuGGUGCuaCGCUuGCG-CAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 124288 0.66 0.995783
Target:  5'- -cGCCGgGAgGCGAGuCGCGgcCGGACGg -3'
miRNA:   3'- auUGGUgCUaCGCUU-GCGCa-GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 8062 0.66 0.995783
Target:  5'- --cCCACGucGCGGcCGCaGUCGGGCAc -3'
miRNA:   3'- auuGGUGCuaCGCUuGCG-CAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 90954 0.66 0.995783
Target:  5'- ---aCACGGUGUu--UGCGUCGGGCGc -3'
miRNA:   3'- auugGUGCUACGcuuGCGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 48945 0.66 0.995716
Target:  5'- cGACCAUGucaagguAUGCGAAUGCGgguccgaguUUGAGCu -3'
miRNA:   3'- aUUGGUGC-------UACGCUUGCGC---------AGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 82043 0.66 0.99537
Target:  5'- --uCUACGAUGCGcaGGCGCGccuccucuagagcgCGGACAa -3'
miRNA:   3'- auuGGUGCUACGC--UUGCGCa-------------GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 141373 0.66 0.995077
Target:  5'- --cCCAUGAUGU--ACGCGaaUCGGACGc -3'
miRNA:   3'- auuGGUGCUACGcuUGCGC--AGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 13874 0.66 0.995077
Target:  5'- --cCCACGAccUGCucuACGCGUCGucgccuGCAg -3'
miRNA:   3'- auuGGUGCU--ACGcu-UGCGCAGCu-----UGU- -5'
24456 3' -50.9 NC_005264.1 + 14530 0.66 0.995077
Target:  5'- gGGCCACGcgaugacucUGCGAA-GCGUgGAGCu -3'
miRNA:   3'- aUUGGUGCu--------ACGCUUgCGCAgCUUGu -5'
24456 3' -50.9 NC_005264.1 + 97399 0.66 0.994278
Target:  5'- gGGCCcgaGCGAUGCGA-CGUGUguucggcagUGAGCGc -3'
miRNA:   3'- aUUGG---UGCUACGCUuGCGCA---------GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 50318 0.66 0.994278
Target:  5'- cGGCCugGAgccGCGAguacGCGgCGUCGAc-- -3'
miRNA:   3'- aUUGGugCUa--CGCU----UGC-GCAGCUugu -5'
24456 3' -50.9 NC_005264.1 + 59760 0.66 0.994278
Target:  5'- cGGCUGCGAcGCGGACGCuUCGcggGACu -3'
miRNA:   3'- aUUGGUGCUaCGCUUGCGcAGC---UUGu -5'
24456 3' -50.9 NC_005264.1 + 71830 0.66 0.994278
Target:  5'- --cCCGCGGggucGCGAauaacgACGCGUCGcGGCGg -3'
miRNA:   3'- auuGGUGCUa---CGCU------UGCGCAGC-UUGU- -5'
24456 3' -50.9 NC_005264.1 + 68810 0.66 0.994278
Target:  5'- cGACCGCGuUGcCGAACuGCGUC-AGCc -3'
miRNA:   3'- aUUGGUGCuAC-GCUUG-CGCAGcUUGu -5'
24456 3' -50.9 NC_005264.1 + 144974 0.66 0.994278
Target:  5'- cAGCCcgcCGAuUGCucACGCGgUCGAACAg -3'
miRNA:   3'- aUUGGu--GCU-ACGcuUGCGC-AGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 52204 0.66 0.994278
Target:  5'- gGGCCGUGGggcGCGGugGCG-CGAGCu -3'
miRNA:   3'- aUUGGUGCUa--CGCUugCGCaGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 45939 0.66 0.994193
Target:  5'- -uACCGCGAacaGCGcucuagguaaaacAGCGCG-CGAGCAg -3'
miRNA:   3'- auUGGUGCUa--CGC-------------UUGCGCaGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.