miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24458 5' -59.9 NC_005264.1 + 56852 0.66 0.775774
Target:  5'- gCUGCCa-GAUUGCUCCUgggggccaugGCUA-GGCCa -3'
miRNA:   3'- -GACGGaaCUGACGGGGG----------CGAUgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 94906 0.66 0.774867
Target:  5'- -cGCCggGAa---CCCCGCUacacgacuuuuauGCGGCCg -3'
miRNA:   3'- gaCGGaaCUgacgGGGGCGA-------------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 89863 0.66 0.770312
Target:  5'- cCUGUCUauaGGCUGCCCcaaaggccuaaacuuCCGCaacacCGGCCc -3'
miRNA:   3'- -GACGGAa--CUGACGGG---------------GGCGau---GCCGG- -5'
24458 5' -59.9 NC_005264.1 + 124880 0.66 0.766647
Target:  5'- gUGCCgcgcaacUGGCUaaccGCCCCC-CcAUGGCCu -3'
miRNA:   3'- gACGGa------ACUGA----CGGGGGcGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 114992 0.66 0.766647
Target:  5'- -gGCC----CUGCCCCCGCcACGGg- -3'
miRNA:   3'- gaCGGaacuGACGGGGGCGaUGCCgg -5'
24458 5' -59.9 NC_005264.1 + 72317 0.66 0.766647
Target:  5'- -gGCgUUGGCgguuugGCCUUCGUcgAUGGCCg -3'
miRNA:   3'- gaCGgAACUGa-----CGGGGGCGa-UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 63060 0.66 0.766647
Target:  5'- -cGCCUUGAUcucgGUCUCCaGCU-CGGCg -3'
miRNA:   3'- gaCGGAACUGa---CGGGGG-CGAuGCCGg -5'
24458 5' -59.9 NC_005264.1 + 7275 0.66 0.765728
Target:  5'- -aGCCUUGGCgacgGagagCCCCGCcagugcgUAUGGCUu -3'
miRNA:   3'- gaCGGAACUGa---Cg---GGGGCG-------AUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 36077 0.66 0.765728
Target:  5'- gCUGCCgucGCUGUCCCUcucuucgGC-GCGGCUg -3'
miRNA:   3'- -GACGGaacUGACGGGGG-------CGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 120530 0.66 0.748062
Target:  5'- aCUGCUUgccGGCaG-CCCUGCgACGGCCc -3'
miRNA:   3'- -GACGGAa--CUGaCgGGGGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 76258 0.66 0.748062
Target:  5'- -aGCCgUGACUGCggUCGCcACGGCa -3'
miRNA:   3'- gaCGGaACUGACGggGGCGaUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 2842 0.66 0.748062
Target:  5'- -gGCCggucgcGCUcgcGCCgucgCCCGCUGCGGCUg -3'
miRNA:   3'- gaCGGaac---UGA---CGG----GGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 109536 0.66 0.748062
Target:  5'- -aGCCccugGGCagacuucccguUGCCCCCGaagcccgcGCGGCCa -3'
miRNA:   3'- gaCGGaa--CUG-----------ACGGGGGCga------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 121868 0.66 0.748062
Target:  5'- -gGCCggucgcGCUcgcGCCgucgCCCGCUGCGGCUg -3'
miRNA:   3'- gaCGGaac---UGA---CGG----GGGCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 4114 0.66 0.747122
Target:  5'- -gGCCgaGGgUGUCCCCuCUgccaaacACGGCCg -3'
miRNA:   3'- gaCGGaaCUgACGGGGGcGA-------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 123141 0.66 0.747122
Target:  5'- -gGCCgaGGgUGUCCCCuCUgccaaacACGGCCg -3'
miRNA:   3'- gaCGGaaCUgACGGGGGcGA-------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 12143 0.66 0.738621
Target:  5'- -cGCCggcGCUGCCCgUUGCUGgGGUCu -3'
miRNA:   3'- gaCGGaacUGACGGG-GGCGAUgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 23509 0.66 0.738621
Target:  5'- -aGCCUUc-CU-CCCCCG-UACGGCCc -3'
miRNA:   3'- gaCGGAAcuGAcGGGGGCgAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 34121 0.66 0.738621
Target:  5'- -gGCCUUcGCUGCCUCUGgUgACGGgCg -3'
miRNA:   3'- gaCGGAAcUGACGGGGGCgA-UGCCgG- -5'
24458 5' -59.9 NC_005264.1 + 149478 0.66 0.738621
Target:  5'- -aGCCgcgg--GCCCCgGCU-CGGCCc -3'
miRNA:   3'- gaCGGaacugaCGGGGgCGAuGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.