miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 157643 0.66 0.999325
Target:  5'- uCGCCgCGgcGCGAGACAc--GACAGGAg -3'
miRNA:   3'- cGCGG-GUa-CGCUCUGUuuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 39689 0.66 0.999325
Target:  5'- aGCGgCCGUGUuuGGCAGAggGGACAc-- -3'
miRNA:   3'- -CGCgGGUACGcuCUGUUU--UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 54177 0.66 0.999325
Target:  5'- cGCGCCCuggccGgGAGACGAcacGAGAaAAAAg -3'
miRNA:   3'- -CGCGGGua---CgCUCUGUU---UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 38616 0.66 0.999325
Target:  5'- uCGCCgCGgcGCGAGACAc--GACAGGAg -3'
miRNA:   3'- cGCGG-GUa-CGCUCUGUuuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 13562 0.66 0.999325
Target:  5'- aGCGgCgCggGCGGGACcgggGAAGGGCGGAAc -3'
miRNA:   3'- -CGCgG-GuaCGCUCUG----UUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 132589 0.66 0.999325
Target:  5'- aGCGgCgCggGCGGGACcgggGAAGGGCGGAAc -3'
miRNA:   3'- -CGCgG-GuaCGCUCUG----UUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 158715 0.66 0.999325
Target:  5'- aGCGgCCGUGUuuGGCAGAggGGACAc-- -3'
miRNA:   3'- -CGCgGGUACGcuCUGUUU--UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 16392 0.66 0.999325
Target:  5'- aUGCCCGUgGCGcauuGGCAcucggGGAGGCAAGGg -3'
miRNA:   3'- cGCGGGUA-CGCu---CUGU-----UUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 120705 0.66 0.999311
Target:  5'- cGCGCCgacaaagCcgGCGgucGGGCGGAGGACGGu- -3'
miRNA:   3'- -CGCGG-------GuaCGC---UCUGUUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 130997 0.66 0.999165
Target:  5'- cGCGCCCAUgucuugccgcGCGcGGCAc--GGCAGAGu -3'
miRNA:   3'- -CGCGGGUA----------CGCuCUGUuuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 71591 0.66 0.999165
Target:  5'- gGUGUCCAUGC-AGGCcu-GGAUAGAGc -3'
miRNA:   3'- -CGCGGGUACGcUCUGuuuUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 30087 0.66 0.999165
Target:  5'- cGCGCCCGgacagaaucGCGAGuCGAGAuGCGGGc -3'
miRNA:   3'- -CGCGGGUa--------CGCUCuGUUUUcUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 119271 0.66 0.998973
Target:  5'- gGCGCCaCA-GCGAGGCGGGccgcucGACAu-- -3'
miRNA:   3'- -CGCGG-GUaCGCUCUGUUUu-----CUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 45123 0.66 0.998973
Target:  5'- uCGUCCGcGUGGGGCGAAgaaccAGACAGGc -3'
miRNA:   3'- cGCGGGUaCGCUCUGUUU-----UCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 93002 0.66 0.998973
Target:  5'- cGCGgCCGUaGCGGGgGCAGucAAGGCAGu- -3'
miRNA:   3'- -CGCgGGUA-CGCUC-UGUU--UUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 53980 0.66 0.998973
Target:  5'- gGCGCCgGaacggcgGCGAGACu--GGAUAGGGu -3'
miRNA:   3'- -CGCGGgUa------CGCUCUGuuuUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 244 0.66 0.998973
Target:  5'- gGCGCCaCA-GCGAGGCGGGccgcucGACAu-- -3'
miRNA:   3'- -CGCGG-GUaCGCUCUGUUUu-----CUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 33878 0.66 0.998745
Target:  5'- aGCGUCCGcuCGAGGCGGcGGugGAAc -3'
miRNA:   3'- -CGCGGGUacGCUCUGUUuUCugUUUu -5'
24461 5' -48.4 NC_005264.1 + 123059 0.66 0.998745
Target:  5'- cGgGCCgAUGCaucagGAGACGAuGGGCGAc- -3'
miRNA:   3'- -CgCGGgUACG-----CUCUGUUuUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 132310 0.66 0.998745
Target:  5'- cGCGCCa--GCGAGGCGGGucGugGAGc -3'
miRNA:   3'- -CGCGGguaCGCUCUGUUUu-CugUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.