miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 5' -57.5 NC_005264.1 + 1018 0.66 0.858161
Target:  5'- gUGgGGGGGCAGGGgccGUUCUGUauucucgcgguucuuGCuCCa -3'
miRNA:   3'- -ACgUCCCCGUCUUau-CGAGACG---------------CG-GG- -5'
24462 5' -57.5 NC_005264.1 + 146948 0.66 0.855067
Target:  5'- cGCAGaGGCuGGAUGGCgCUGagGCCg -3'
miRNA:   3'- aCGUCcCCGuCUUAUCGaGACg-CGGg -5'
24462 5' -57.5 NC_005264.1 + 5995 0.66 0.855067
Target:  5'- aGCAGcGcGGCGGuc--GCUgUGCGCaCCu -3'
miRNA:   3'- aCGUC-C-CCGUCuuauCGAgACGCG-GG- -5'
24462 5' -57.5 NC_005264.1 + 139289 0.66 0.847191
Target:  5'- gUGguGGGcGCAGAAUuuGGCcaaaaUGCGUUCu -3'
miRNA:   3'- -ACguCCC-CGUCUUA--UCGag---ACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 116293 0.66 0.847191
Target:  5'- cGgGGGaGGCAuGAAUcugGGCUUcuUGCGCgCCg -3'
miRNA:   3'- aCgUCC-CCGU-CUUA---UCGAG--ACGCG-GG- -5'
24462 5' -57.5 NC_005264.1 + 37090 0.66 0.847191
Target:  5'- cGCGGcGGCAGuuccgGGgaCgGCGCCCc -3'
miRNA:   3'- aCGUCcCCGUCuua--UCgaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 43796 0.66 0.843986
Target:  5'- gUGCGGGGcGCAGuuucugucgcgauAUAGCgugGCGCgCa -3'
miRNA:   3'- -ACGUCCC-CGUCu------------UAUCGagaCGCGgG- -5'
24462 5' -57.5 NC_005264.1 + 162822 0.66 0.843986
Target:  5'- gUGCGGGGcGCAGuuucugucgcgauAUAGCgugGCGCgCa -3'
miRNA:   3'- -ACGUCCC-CGUCu------------UAUCGagaCGCGgG- -5'
24462 5' -57.5 NC_005264.1 + 151304 0.66 0.83912
Target:  5'- --gGGGGGCAGcGUAcGUguuaucCUGCGCCa -3'
miRNA:   3'- acgUCCCCGUCuUAU-CGa-----GACGCGGg -5'
24462 5' -57.5 NC_005264.1 + 148440 0.66 0.83912
Target:  5'- aUGCcuGGuGGuCAGAAcAGC-CgGCGCCCg -3'
miRNA:   3'- -ACGu-CC-CC-GUCUUaUCGaGaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 31547 0.66 0.836662
Target:  5'- gGUGGGGGCGGAcggccauucccgacGUGGag--GCGCCa -3'
miRNA:   3'- aCGUCCCCGUCU--------------UAUCgagaCGCGGg -5'
24462 5' -57.5 NC_005264.1 + 150574 0.66 0.836662
Target:  5'- gGUGGGGGCGGAcggccauucccgacGUGGag--GCGCCa -3'
miRNA:   3'- aCGUCCCCGUCU--------------UAUCgagaCGCGGg -5'
24462 5' -57.5 NC_005264.1 + 96276 0.66 0.831696
Target:  5'- aGCAGGuGGCGGcggAGCUUguggaaaucgccgaCGCCCg -3'
miRNA:   3'- aCGUCC-CCGUCuuaUCGAGac------------GCGGG- -5'
24462 5' -57.5 NC_005264.1 + 144940 0.66 0.830862
Target:  5'- --gGGGGGCuGAucagcuGCUgUGCGCgCCg -3'
miRNA:   3'- acgUCCCCGuCUuau---CGAgACGCG-GG- -5'
24462 5' -57.5 NC_005264.1 + 108443 0.66 0.830862
Target:  5'- cGUGGGGagauuaGCGGAGUuGCcgcauuccUCUGCGUCCu -3'
miRNA:   3'- aCGUCCC------CGUCUUAuCG--------AGACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 58010 0.66 0.830862
Target:  5'- aGCGGccccGGCGGAcaGGCcgUCgugcgGCGCCCg -3'
miRNA:   3'- aCGUCc---CCGUCUuaUCG--AGa----CGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 104378 0.66 0.822424
Target:  5'- cGC-GcGGCAGAuaGGCUg-GCGCCCg -3'
miRNA:   3'- aCGuCcCCGUCUuaUCGAgaCGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 155680 0.66 0.82157
Target:  5'- aGCGGGgugacucGGCAGGgcGUAGcCUCagGCuGCCCu -3'
miRNA:   3'- aCGUCC-------CCGUCU--UAUC-GAGa-CG-CGGG- -5'
24462 5' -57.5 NC_005264.1 + 113857 0.66 0.813813
Target:  5'- cGguGGauuGCgaGGAAgAGUUCUGCGCCUa -3'
miRNA:   3'- aCguCCc--CG--UCUUaUCGAGACGCGGG- -5'
24462 5' -57.5 NC_005264.1 + 85781 0.66 0.812943
Target:  5'- cGCGGGGGCuGuuaAGCUugaucaaCUGCaCCCu -3'
miRNA:   3'- aCGUCCCCGuCuuaUCGA-------GACGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.