Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24466 | 3' | -54.1 | NC_005264.1 | + | 37581 | 0.68 | 0.930835 |
Target: 5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3' miRNA: 3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 133240 | 0.68 | 0.925576 |
Target: 5'- cGCGCUACG-CUucgAUCuGGAgCCGCaGGCa -3' miRNA: 3'- -CGCGAUGCaGA---UAG-UCUaGGCG-CCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 13189 | 0.7 | 0.852378 |
Target: 5'- cGCGCUGCG-Cg--CGGAUCCGUcGCc -3' miRNA: 3'- -CGCGAUGCaGauaGUCUAGGCGcCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 98062 | 0.72 | 0.745922 |
Target: 5'- gGCGCUGCG-Cg--CAGAUCguuuCGCGGCc -3' miRNA: 3'- -CGCGAUGCaGauaGUCUAG----GCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 102714 | 0.68 | 0.925576 |
Target: 5'- uUGCUACGcCacggUGUCGGAaaaagUCGCGGCGu -3' miRNA: 3'- cGCGAUGCaG----AUAGUCUa----GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 128982 | 0.69 | 0.875021 |
Target: 5'- aCGCUccACGUUcuUCAGcucugCCGCGGCGc -3' miRNA: 3'- cGCGA--UGCAGauAGUCua---GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 45256 | 0.7 | 0.844422 |
Target: 5'- aCGUgACGUCUguAUCAGAagauagcgagUCCGaCGGCGa -3' miRNA: 3'- cGCGaUGCAGA--UAGUCU----------AGGC-GCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 130273 | 0.68 | 0.930835 |
Target: 5'- uGCGCgACGUUgcggCGGcuaCCGCGGCa -3' miRNA: 3'- -CGCGaUGCAGaua-GUCua-GGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 116909 | 0.69 | 0.895714 |
Target: 5'- aGCGCUguucGCGguaccagUUGggagCAGAUugCCGCGGCGg -3' miRNA: 3'- -CGCGA----UGCa------GAUa---GUCUA--GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 38251 | 0.68 | 0.925576 |
Target: 5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3' miRNA: 3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 157278 | 0.68 | 0.925576 |
Target: 5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3' miRNA: 3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 18552 | 0.73 | 0.696447 |
Target: 5'- cGCGCcgGCGUCaGUCGGAgcggcaUCCGcCGGCc -3' miRNA: 3'- -CGCGa-UGCAGaUAGUCU------AGGC-GCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 7931 | 0.67 | 0.935856 |
Target: 5'- cGCGCguccacGCGUC-GUCcacggCCGCGGCGu -3' miRNA: 3'- -CGCGa-----UGCAGaUAGucua-GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 111486 | 0.66 | 0.967653 |
Target: 5'- aCGCUGCGcCcuUCcuGUCgGCGGCGa -3' miRNA: 3'- cGCGAUGCaGauAGucUAGgCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 132216 | 0.7 | 0.852378 |
Target: 5'- cGCGCUGCG-Cg--CGGAUCCGUcGCc -3' miRNA: 3'- -CGCGAUGCaGauaGUCUAGGCGcCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 60280 | 0.66 | 0.968872 |
Target: 5'- aGCGCcGCGUCgggcaugacguacUCGGAUUCG-GGCGc -3' miRNA: 3'- -CGCGaUGCAGau-----------AGUCUAGGCgCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 39183 | 0.66 | 0.970638 |
Target: 5'- gGCGCgcgAC-UCUAccgcgcaucgcuUCAGAgUCUGCGGCu -3' miRNA: 3'- -CGCGa--UGcAGAU------------AGUCU-AGGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 57961 | 0.66 | 0.970638 |
Target: 5'- cGUGCUugugccuauCGUC-AUCGGAgUCCccgcGCGGCGg -3' miRNA: 3'- -CGCGAu--------GCAGaUAGUCU-AGG----CGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 156608 | 0.68 | 0.930835 |
Target: 5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3' miRNA: 3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 2663 | 0.68 | 0.920078 |
Target: 5'- gGCaGCUcugACGUCcuaGUCGGGUCCGCaaGCGg -3' miRNA: 3'- -CG-CGA---UGCAGa--UAGUCUAGGCGc-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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