miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24475 5' -55.8 NC_005264.1 + 25772 0.66 0.916348
Target:  5'- -uUGGCAccGCUUCGCcugGAUCUgCUCACg -3'
miRNA:   3'- acGCCGU--UGAGGCGa--UUAGAgGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 150287 0.66 0.910412
Target:  5'- aGCGGUAuCUUCGCggcgaacgCcCCCCGCu -3'
miRNA:   3'- aCGCCGUuGAGGCGauua----GaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 12022 0.66 0.910412
Target:  5'- gGCGGCGACcgCCGCccuUAggCgaagCgCCCGCg -3'
miRNA:   3'- aCGCCGUUGa-GGCG---AUuaGa---G-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 124498 0.66 0.910412
Target:  5'- aGCGGCAGcCUCCGCcAAg---UCCACa -3'
miRNA:   3'- aCGCCGUU-GAGGCGaUUagagGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 159508 0.66 0.910412
Target:  5'- gUGUGGCGcgacuacucucGCUCCGCUugcacggcgcgcGAUC-CCgCGCg -3'
miRNA:   3'- -ACGCCGU-----------UGAGGCGA------------UUAGaGGgGUG- -5'
24475 5' -55.8 NC_005264.1 + 105548 0.66 0.910412
Target:  5'- aUGUGGCcgggcaauggGAUUCCaauuacgacGUguGUCUCCCCACg -3'
miRNA:   3'- -ACGCCG----------UUGAGG---------CGauUAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 146831 0.66 0.910412
Target:  5'- cGCGGCGGuCgucgCCugccaugaugcgGCUaAAUCUCCCCGg -3'
miRNA:   3'- aCGCCGUU-Ga---GG------------CGA-UUAGAGGGGUg -5'
24475 5' -55.8 NC_005264.1 + 131049 0.66 0.910412
Target:  5'- gGCGGCGACcgCCGCccuUAggCgaagCgCCCGCg -3'
miRNA:   3'- aCGCCGUUGa-GGCG---AUuaGa---G-GGGUG- -5'
24475 5' -55.8 NC_005264.1 + 60866 0.66 0.910412
Target:  5'- cGCGGCAAagUUUuCUAGUCUCUCgGCg -3'
miRNA:   3'- aCGCCGUUg-AGGcGAUUAGAGGGgUG- -5'
24475 5' -55.8 NC_005264.1 + 31260 0.66 0.910412
Target:  5'- aGCGGUAuCUUCGCggcgaacgCcCCCCGCu -3'
miRNA:   3'- aCGCCGUuGAGGCGauua----GaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 42747 0.66 0.909806
Target:  5'- cGCGGCAcccggugggcacgACUcCCGCUAGccggCgUCCgCCACc -3'
miRNA:   3'- aCGCCGU-------------UGA-GGCGAUUa---G-AGG-GGUG- -5'
24475 5' -55.8 NC_005264.1 + 30703 0.66 0.909196
Target:  5'- gUGCGGUucagacgaguccgcGCUCCGUUcggaAuccucggagcccaagGUCUCCCCGCc -3'
miRNA:   3'- -ACGCCGu-------------UGAGGCGA----U---------------UAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 149729 0.66 0.909196
Target:  5'- gUGCGGUucagacgaguccgcGCUCCGUUcggaAuccucggagcccaagGUCUCCCCGCc -3'
miRNA:   3'- -ACGCCGu-------------UGAGGCGA----U---------------UAGAGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 157318 0.66 0.904237
Target:  5'- gGCGGCGACgUUCGUUAcgC-CUUCGCg -3'
miRNA:   3'- aCGCCGUUG-AGGCGAUuaGaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 78648 0.66 0.904237
Target:  5'- cGCGGCGGCcCUGUgccUCgUCCCACu -3'
miRNA:   3'- aCGCCGUUGaGGCGauuAGaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 68639 0.66 0.904237
Target:  5'- cGUGGUAggcgacgagGCUCUGC-AGUUUCCCCc- -3'
miRNA:   3'- aCGCCGU---------UGAGGCGaUUAGAGGGGug -5'
24475 5' -55.8 NC_005264.1 + 37093 0.66 0.904237
Target:  5'- gGCGGCAGUUCCGggGA-CggcgCCCCAa -3'
miRNA:   3'- aCGCCGUUGAGGCgaUUaGa---GGGGUg -5'
24475 5' -55.8 NC_005264.1 + 94623 0.66 0.904237
Target:  5'- gUGCGGCGuggACg-CGCUGuuuUCcgUCCCCAUg -3'
miRNA:   3'- -ACGCCGU---UGagGCGAUu--AG--AGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 38291 0.66 0.904237
Target:  5'- gGCGGCGACgUUCGUUAcgC-CUUCGCg -3'
miRNA:   3'- aCGCCGUUG-AGGCGAUuaGaGGGGUG- -5'
24475 5' -55.8 NC_005264.1 + 24354 0.66 0.900418
Target:  5'- cGCGGCAACcgCCGCagguacggaacgaagUAGUggUCCCCGa -3'
miRNA:   3'- aCGCCGUUGa-GGCG---------------AUUAg-AGGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.