miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 77965 0.66 0.925576
Target:  5'- aGAGacCUGCcgGCGCCGCgCGuaccggaGCGGGCg -3'
miRNA:   3'- gCUCa-GACG--CGCGGCG-GUua-----CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 77372 0.66 0.925576
Target:  5'- --cGUCUaGCGCGUCGCCc--GUAAGg -3'
miRNA:   3'- gcuCAGA-CGCGCGGCGGuuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 66604 0.66 0.920078
Target:  5'- uGGG-CUGCgccgcguugccgGCGCCGUCGcgGCccgAGGCa -3'
miRNA:   3'- gCUCaGACG------------CGCGGCGGUuaCG---UUCG- -5'
24487 5' -55.9 NC_005264.1 + 75082 0.66 0.920078
Target:  5'- uGGuUCUuCGCGgCGCUGcgGCAGGCg -3'
miRNA:   3'- gCUcAGAcGCGCgGCGGUuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 135375 0.66 0.920078
Target:  5'- aGAGaaaauguccUUUGCuGCGCCGCuCGGcGCAGGUc -3'
miRNA:   3'- gCUC---------AGACG-CGCGGCG-GUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 97430 0.66 0.916664
Target:  5'- uGAGcgCUGCggGCGCCGCCGcgGaucugauagacguAGCg -3'
miRNA:   3'- gCUCa-GACG--CGCGGCGGUuaCgu-----------UCG- -5'
24487 5' -55.9 NC_005264.1 + 129626 0.66 0.914341
Target:  5'- uCGAGUagacGCcgaGCGCCGCCAGccuUAAGCg -3'
miRNA:   3'- -GCUCAga--CG---CGCGGCGGUUac-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 17340 0.66 0.914341
Target:  5'- gGAcGUCUGCaGUGCCuuCCGcgGCAgcuGGCg -3'
miRNA:   3'- gCU-CAGACG-CGCGGc-GGUuaCGU---UCG- -5'
24487 5' -55.9 NC_005264.1 + 39211 0.66 0.914341
Target:  5'- aGAGUCUGCG-GCUGCCGGa------ -3'
miRNA:   3'- gCUCAGACGCgCGGCGGUUacguucg -5'
24487 5' -55.9 NC_005264.1 + 100190 0.66 0.914341
Target:  5'- aCGAGUUcggucGCGUGCUGCgCuuggacgGCGGGCg -3'
miRNA:   3'- -GCUCAGa----CGCGCGGCG-Guua----CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 42553 0.66 0.914341
Target:  5'- gCGcGUCUuCGCGCCggcagccuuGCCGGagGCGAGCc -3'
miRNA:   3'- -GCuCAGAcGCGCGG---------CGGUUa-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 83193 0.66 0.914341
Target:  5'- aGAGUuaaCUGCGCGagguuugGCCAggAUGCGcAGCa -3'
miRNA:   3'- gCUCA---GACGCGCgg-----CGGU--UACGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 39540 0.66 0.913754
Target:  5'- ---cUCUGC-CGCCGCCccgcgguucccgcGcgGCAAGCc -3'
miRNA:   3'- gcucAGACGcGCGGCGG-------------UuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 158567 0.66 0.913754
Target:  5'- ---cUCUGC-CGCCGCCccgcgguucccgcGcgGCAAGCc -3'
miRNA:   3'- gcucAGACGcGCGGCGG-------------UuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 52856 0.66 0.908367
Target:  5'- gGAG-CUGCGCGCauacgacgUGCaCAcgcGCGAGCg -3'
miRNA:   3'- gCUCaGACGCGCG--------GCG-GUua-CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 43624 0.66 0.908367
Target:  5'- uCGAGgcUCggaaGCGCGCCGgCGAggucGUAGGUg -3'
miRNA:   3'- -GCUC--AGa---CGCGCGGCgGUUa---CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 86992 0.66 0.908367
Target:  5'- gGAGUC-GCaGCGCCucgugGCgCAAUGCAuagaaAGCu -3'
miRNA:   3'- gCUCAGaCG-CGCGG-----CG-GUUACGU-----UCG- -5'
24487 5' -55.9 NC_005264.1 + 109567 0.66 0.902157
Target:  5'- ----aCUGCgGCGCCGCgGGacaGCAAGCc -3'
miRNA:   3'- gcucaGACG-CGCGGCGgUUa--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 6526 0.66 0.902157
Target:  5'- gCGcGUUUGCaGCGCCGCguAcgggagacccUGCGAGUu -3'
miRNA:   3'- -GCuCAGACG-CGCGGCGguU----------ACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 124228 0.66 0.902157
Target:  5'- uCGuGUCU-CGCGCCGCg---GCGAGg -3'
miRNA:   3'- -GCuCAGAcGCGCGGCGguuaCGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.