miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 5' -55.9 NC_005264.1 + 131234 0.71 0.645621
Target:  5'- aGGGcgaUGCGCGCCGCCuc-GCcagaGAGCa -3'
miRNA:   3'- gCUCag-ACGCGCGGCGGuuaCG----UUCG- -5'
24487 5' -55.9 NC_005264.1 + 129626 0.66 0.914341
Target:  5'- uCGAGUagacGCcgaGCGCCGCCAGccuUAAGCg -3'
miRNA:   3'- -GCUCAga--CG---CGCGGCGGUUac-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 129552 0.67 0.867683
Target:  5'- gCGGGUCcugUGCgGCGCCGCCcucagGGGCg -3'
miRNA:   3'- -GCUCAG---ACG-CGCGGCGGuuacgUUCG- -5'
24487 5' -55.9 NC_005264.1 + 129507 0.69 0.768857
Target:  5'- aGGGUUUG-GCGgCGCCGGaggcgacggaaccacUGCGGGCg -3'
miRNA:   3'- gCUCAGACgCGCgGCGGUU---------------ACGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 127006 0.67 0.860134
Target:  5'- aCGAagGUCcGUGCacggGCCGCCAuUGCGGGg -3'
miRNA:   3'- -GCU--CAGaCGCG----CGGCGGUuACGUUCg -5'
24487 5' -55.9 NC_005264.1 + 125159 0.68 0.836275
Target:  5'- uGGG-CUGCGaUGCuuguggggCGCCGAUGCcGGCa -3'
miRNA:   3'- gCUCaGACGC-GCG--------GCGGUUACGuUCG- -5'
24487 5' -55.9 NC_005264.1 + 124228 0.66 0.902157
Target:  5'- uCGuGUCU-CGCGCCGCg---GCGAGg -3'
miRNA:   3'- -GCuCAGAcGCGCGGCGguuaCGUUCg -5'
24487 5' -55.9 NC_005264.1 + 123669 0.7 0.706487
Target:  5'- aGAGUC-GCGCGCCcaGCCAAUaauucggacgucGguGGCu -3'
miRNA:   3'- gCUCAGaCGCGCGG--CGGUUA------------CguUCG- -5'
24487 5' -55.9 NC_005264.1 + 122791 0.71 0.683318
Target:  5'- cCGGGgcgCUGCGggcccuuggucgacCGCCGCCGAucUGCGuGGCg -3'
miRNA:   3'- -GCUCa--GACGC--------------GCGGCGGUU--ACGU-UCG- -5'
24487 5' -55.9 NC_005264.1 + 122030 0.69 0.792906
Target:  5'- uGAGUCUcgGCGaCC-CCGcgGCAAGCg -3'
miRNA:   3'- gCUCAGAcgCGC-GGcGGUuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 121911 0.74 0.492259
Target:  5'- gCGGGUCUGUucagaagcuagcccGCGCCGCCGA--CAGGUa -3'
miRNA:   3'- -GCUCAGACG--------------CGCGGCGGUUacGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 121635 0.67 0.889042
Target:  5'- gGAGaagGCGCGa-GCCGA-GCAGGCg -3'
miRNA:   3'- gCUCagaCGCGCggCGGUUaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 120966 0.8 0.23884
Target:  5'- aGAGUCUGUGCGCgGCCGuUGCccccccccccGAGCu -3'
miRNA:   3'- gCUCAGACGCGCGgCGGUuACG----------UUCG- -5'
24487 5' -55.9 NC_005264.1 + 117657 0.69 0.77355
Target:  5'- gGGGUUUGUGUcggGCCGCCAagagccaGUGguGGUg -3'
miRNA:   3'- gCUCAGACGCG---CGGCGGU-------UACguUCG- -5'
24487 5' -55.9 NC_005264.1 + 117010 0.68 0.81943
Target:  5'- -cGGUCUGCGCGgCGC--AUGaCGAGUa -3'
miRNA:   3'- gcUCAGACGCGCgGCGguUAC-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 116071 0.7 0.716463
Target:  5'- uGAGUUUGUGCGCCGC--GUGCc--- -3'
miRNA:   3'- gCUCAGACGCGCGGCGguUACGuucg -5'
24487 5' -55.9 NC_005264.1 + 112574 0.67 0.882143
Target:  5'- aCGAGcaacUCgGaauCGCCGCCGcgGCAGGUg -3'
miRNA:   3'- -GCUC----AGaCgc-GCGGCGGUuaCGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 112035 0.67 0.889042
Target:  5'- ----cCUGCGCGCgCGCCGAUccGaCAAGUu -3'
miRNA:   3'- gcucaGACGCGCG-GCGGUUA--C-GUUCG- -5'
24487 5' -55.9 NC_005264.1 + 109567 0.66 0.902157
Target:  5'- ----aCUGCgGCGCCGCgGGacaGCAAGCc -3'
miRNA:   3'- gcucaGACG-CGCGGCGgUUa--CGUUCG- -5'
24487 5' -55.9 NC_005264.1 + 109270 0.67 0.860134
Target:  5'- aCGcGUCggGCGCGUCGUacc-GCGAGCu -3'
miRNA:   3'- -GCuCAGa-CGCGCGGCGguuaCGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.