miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 3' -57.9 NC_005264.1 + 120139 0.66 0.851806
Target:  5'- aGGaGGaCGGAGCGCCg----GCCGGCg -3'
miRNA:   3'- aCCgCC-GCUUUGCGGgaugaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 9607 0.66 0.851806
Target:  5'- aGGCGacGCGAAcuGCGCUgaGCagGCCAGa -3'
miRNA:   3'- aCCGC--CGCUU--UGCGGgaUGa-CGGUCg -5'
24507 3' -57.9 NC_005264.1 + 128634 0.66 0.851806
Target:  5'- aGGCGacGCGAAcuGCGCUgaGCagGCCAGa -3'
miRNA:   3'- aCCGC--CGCUU--UGCGGgaUGa-CGGUCg -5'
24507 3' -57.9 NC_005264.1 + 103045 0.66 0.851806
Target:  5'- aUGGUGcGCuacGCGCCCc-CUGCgGGCg -3'
miRNA:   3'- -ACCGC-CGcuuUGCGGGauGACGgUCG- -5'
24507 3' -57.9 NC_005264.1 + 83897 0.66 0.851806
Target:  5'- -uGCGGUGGAGCGUgCUAucuCUGCgagaGGCg -3'
miRNA:   3'- acCGCCGCUUUGCGgGAU---GACGg---UCG- -5'
24507 3' -57.9 NC_005264.1 + 65164 0.66 0.851806
Target:  5'- -cGCGGCG--GCGCCCUcuCUGgCCauGGCc -3'
miRNA:   3'- acCGCCGCuuUGCGGGAu-GAC-GG--UCG- -5'
24507 3' -57.9 NC_005264.1 + 118972 0.66 0.851806
Target:  5'- cGGCGaCGAcgaaGACGUCU--UUGCCGGCc -3'
miRNA:   3'- aCCGCcGCU----UUGCGGGauGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 69836 0.66 0.851806
Target:  5'- cGG-GGUGAAGgcCGCCCUGCUuggggcaucGCCccuacGGCg -3'
miRNA:   3'- aCCgCCGCUUU--GCGGGAUGA---------CGG-----UCG- -5'
24507 3' -57.9 NC_005264.1 + 42705 0.66 0.851806
Target:  5'- cGGcCGGCGcucCGUCCUcCUGCUcGCu -3'
miRNA:   3'- aCC-GCCGCuuuGCGGGAuGACGGuCG- -5'
24507 3' -57.9 NC_005264.1 + 136938 0.66 0.851806
Target:  5'- gUGGCGGacaaGAAggcgcaGCGCCCcACUGUgCGGa -3'
miRNA:   3'- -ACCGCCg---CUU------UGCGGGaUGACG-GUCg -5'
24507 3' -57.9 NC_005264.1 + 11765 0.66 0.851027
Target:  5'- gGcGCGGCGAaacgguuGACGCUCU-CguagGCCgAGCc -3'
miRNA:   3'- aC-CGCCGCU-------UUGCGGGAuGa---CGG-UCG- -5'
24507 3' -57.9 NC_005264.1 + 70158 0.66 0.847105
Target:  5'- cGGCGGCGccucacuaccgcaauAccugcgaggugGACGCCUUACgcacauucgUGCUGGCa -3'
miRNA:   3'- aCCGCCGC---------------U-----------UUGCGGGAUG---------ACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 18014 0.66 0.843933
Target:  5'- cGGCGGCGGGuCGgCC-GCgGUCAGg -3'
miRNA:   3'- aCCGCCGCUUuGCgGGaUGaCGGUCg -5'
24507 3' -57.9 NC_005264.1 + 59111 0.66 0.843933
Target:  5'- aUGGCGGCcgc-CGCCgCUGaUGCCGcGCc -3'
miRNA:   3'- -ACCGCCGcuuuGCGG-GAUgACGGU-CG- -5'
24507 3' -57.9 NC_005264.1 + 133395 0.66 0.843933
Target:  5'- cGGCGGCGcagcccguuGGugGCCCcAaaGCCuacGCg -3'
miRNA:   3'- aCCGCCGC---------UUugCGGGaUgaCGGu--CG- -5'
24507 3' -57.9 NC_005264.1 + 88166 0.66 0.843933
Target:  5'- cGGUGGCGcuAACGCaCCaGCUcaagagcgGCCuGCa -3'
miRNA:   3'- aCCGCCGCu-UUGCG-GGaUGA--------CGGuCG- -5'
24507 3' -57.9 NC_005264.1 + 73156 0.66 0.843933
Target:  5'- cUGGUaGCGcucAUGCCC-ACcGCCAGCu -3'
miRNA:   3'- -ACCGcCGCuu-UGCGGGaUGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 91509 0.66 0.835872
Target:  5'- cGGCGGCGuaGAAUGCCgCgcACUcGCCaAGUu -3'
miRNA:   3'- aCCGCCGC--UUUGCGG-Ga-UGA-CGG-UCG- -5'
24507 3' -57.9 NC_005264.1 + 74488 0.66 0.835872
Target:  5'- cUGGuuGCGAGAgCGCCaaagGCgGCCAGg -3'
miRNA:   3'- -ACCgcCGCUUU-GCGGga--UGaCGGUCg -5'
24507 3' -57.9 NC_005264.1 + 154922 0.66 0.835872
Target:  5'- cGGCaGCGuuACGUCCccccagUACU-CCGGCg -3'
miRNA:   3'- aCCGcCGCuuUGCGGG------AUGAcGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.