miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 5' -53.4 NC_005264.1 + 144194 0.66 0.973525
Target:  5'- cUCAUUAgcauACGguGGGCGGCaccccaccacgucacUUUCGCa- -3'
miRNA:   3'- -GGUAAU----UGCguCCCGUCG---------------GAAGCGag -5'
24507 5' -53.4 NC_005264.1 + 119504 0.66 0.973525
Target:  5'- -----uGCGCAGGGCgugcuccgaggcggcAGCCcUCGCg- -3'
miRNA:   3'- gguaauUGCGUCCCG---------------UCGGaAGCGag -5'
24507 5' -53.4 NC_005264.1 + 109962 0.66 0.972417
Target:  5'- cCCugcugAugGCAGGuaccGCgAGCCUgccCGCUCg -3'
miRNA:   3'- -GGuaa--UugCGUCC----CG-UCGGAa--GCGAG- -5'
24507 5' -53.4 NC_005264.1 + 60625 0.66 0.969501
Target:  5'- gCCGgcucGCGCAGGaGCAGCa---GCUUg -3'
miRNA:   3'- -GGUaau-UGCGUCC-CGUCGgaagCGAG- -5'
24507 5' -53.4 NC_005264.1 + 61911 0.66 0.969501
Target:  5'- gUAUUAgGCGCAcGGGC-GCCgcCGCUUg -3'
miRNA:   3'- gGUAAU-UGCGU-CCCGuCGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 154632 0.66 0.966047
Target:  5'- aCCAgcGGcCGCGGGGCAuaaugccagucacGCUgUUGCUCu -3'
miRNA:   3'- -GGUaaUU-GCGUCCCGU-------------CGGaAGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 83226 0.66 0.963023
Target:  5'- gCCGUU-GCGCGuGGGCgucuaGGCCgcCGCUg -3'
miRNA:   3'- -GGUAAuUGCGU-CCCG-----UCGGaaGCGAg -5'
24507 5' -53.4 NC_005264.1 + 116666 0.66 0.963023
Target:  5'- ----gAugGCGGGGCGGCCgcCGaUCc -3'
miRNA:   3'- gguaaUugCGUCCCGUCGGaaGCgAG- -5'
24507 5' -53.4 NC_005264.1 + 3425 0.67 0.955643
Target:  5'- ----gGACGUAGGGCcgcGCCcgCGCUg -3'
miRNA:   3'- gguaaUUGCGUCCCGu--CGGaaGCGAg -5'
24507 5' -53.4 NC_005264.1 + 122452 0.67 0.955643
Target:  5'- ----gGACGUAGGGCcgcGCCcgCGCUg -3'
miRNA:   3'- gguaaUUGCGUCCCGu--CGGaaGCGAg -5'
24507 5' -53.4 NC_005264.1 + 158149 0.67 0.955643
Target:  5'- cCCGagaacguCGCAGaGCAGCUUUCGCa- -3'
miRNA:   3'- -GGUaauu---GCGUCcCGUCGGAAGCGag -5'
24507 5' -53.4 NC_005264.1 + 12014 0.67 0.955643
Target:  5'- aCGUgauCGCaguuuucaGGGGCAGUCgcugCGCUCc -3'
miRNA:   3'- gGUAauuGCG--------UCCCGUCGGaa--GCGAG- -5'
24507 5' -53.4 NC_005264.1 + 101761 0.67 0.954455
Target:  5'- cCCAaagGACGUGGuGGCGGCCcugaacggagccgaaCGCUCg -3'
miRNA:   3'- -GGUaa-UUGCGUC-CCGUCGGaa-------------GCGAG- -5'
24507 5' -53.4 NC_005264.1 + 35271 0.67 0.951602
Target:  5'- aCAcUGGCGCGGGcGCGGCCguggUCcugacuGUUCa -3'
miRNA:   3'- gGUaAUUGCGUCC-CGUCGGa---AG------CGAG- -5'
24507 5' -53.4 NC_005264.1 + 23715 0.67 0.951602
Target:  5'- cCCuc-AACGCccaaAGGGCAcacGCCgcCGCUCa -3'
miRNA:   3'- -GGuaaUUGCG----UCCCGU---CGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 55086 0.67 0.951602
Target:  5'- gCCAUUGACGCGGaGGCAaC--UCGCa- -3'
miRNA:   3'- -GGUAAUUGCGUC-CCGUcGgaAGCGag -5'
24507 5' -53.4 NC_005264.1 + 52717 0.67 0.951602
Target:  5'- cCCAaaAGCGCGGcGGCucucGGCCccugUCGUUCu -3'
miRNA:   3'- -GGUaaUUGCGUC-CCG----UCGGa---AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 162159 0.67 0.951184
Target:  5'- aCCGUaAACGUucGGGCAGgCUcccgucaggcucaUCGCUUa -3'
miRNA:   3'- -GGUAaUUGCGu-CCCGUCgGA-------------AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 26993 0.67 0.947321
Target:  5'- aCGUggcACGC-GGGUAGCCauucUCGCUUu -3'
miRNA:   3'- gGUAau-UGCGuCCCGUCGGa---AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 85027 0.67 0.942798
Target:  5'- gCCAUgugcCGCGGGGCauucGGCaacgUCGCUa -3'
miRNA:   3'- -GGUAauu-GCGUCCCG----UCGga--AGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.