miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24514 5' -49.7 NC_005264.1 + 44098 0.65 0.998751
Target:  5'- aGCuUGCCCGAagacuggggaggggGCGGGAUAgcggcgauuacgAGCGGGa -3'
miRNA:   3'- cCGcAUGGGUU--------------UGUUCUAU------------UCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 124705 0.66 0.998572
Target:  5'- uGCGUuCCCAcgaguAC-AGAgcgcGCGGGCa -3'
miRNA:   3'- cCGCAuGGGUu----UGuUCUauu-CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 5678 0.66 0.998572
Target:  5'- uGCGUuCCCAcgaguAC-AGAgcgcGCGGGCa -3'
miRNA:   3'- cCGCAuGGGUu----UGuUCUauu-CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 45748 0.66 0.998545
Target:  5'- cGGuCGUGCCguaucuagcacaCAGACAGcGAUGGGCGccggagcGGCu -3'
miRNA:   3'- -CC-GCAUGG------------GUUUGUU-CUAUUCGC-------CCG- -5'
24514 5' -49.7 NC_005264.1 + 51811 0.66 0.998545
Target:  5'- cGCGaGCCaccgcuuCGAAcCAGGAgagGGGUGGGCg -3'
miRNA:   3'- cCGCaUGG-------GUUU-GUUCUa--UUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 23288 0.66 0.998489
Target:  5'- cGCGUGCagCGAgcgcaaacaucgccACGAGugcGGCGGGCc -3'
miRNA:   3'- cCGCAUGg-GUU--------------UGUUCuauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 19348 0.66 0.998489
Target:  5'- cGCGUAgCCAuuccaggagcaaccGGCGucAGGUAAGCGuGCg -3'
miRNA:   3'- cCGCAUgGGU--------------UUGU--UCUAUUCGCcCG- -5'
24514 5' -49.7 NC_005264.1 + 96249 0.66 0.998403
Target:  5'- cGGCGcaGCCCAgcgagagccuguaccAGCAGGuggcGGCGGaGCu -3'
miRNA:   3'- -CCGCa-UGGGU---------------UUGUUCuau-UCGCC-CG- -5'
24514 5' -49.7 NC_005264.1 + 26772 0.66 0.998403
Target:  5'- cGGCgGUAUCCGAcucgauccuGCAcgcgggcuuccacgaGGAgAAGUGGGCc -3'
miRNA:   3'- -CCG-CAUGGGUU---------UGU---------------UCUaUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 146349 0.66 0.99828
Target:  5'- cGGCGUGCCuCGAccccGCAGGccaccGCGGcuGCg -3'
miRNA:   3'- -CCGCAUGG-GUU----UGUUCuauu-CGCC--CG- -5'
24514 5' -49.7 NC_005264.1 + 4460 0.66 0.99828
Target:  5'- cGGCu--CCCAuaGGCGAGGcUAAGCGGa- -3'
miRNA:   3'- -CCGcauGGGU--UUGUUCU-AUUCGCCcg -5'
24514 5' -49.7 NC_005264.1 + 121475 0.66 0.99828
Target:  5'- cGUGUGCCCGuuCuucccgGAGCuGGGCc -3'
miRNA:   3'- cCGCAUGGGUuuGuucua-UUCG-CCCG- -5'
24514 5' -49.7 NC_005264.1 + 2140 0.66 0.99828
Target:  5'- uGCGagcauuaACCCAuGCGAGcAUAGaccccuGCGGGCa -3'
miRNA:   3'- cCGCa------UGGGUuUGUUC-UAUU------CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 2448 0.66 0.99828
Target:  5'- cGUGUGCCCGuuCuucccgGAGCuGGGCc -3'
miRNA:   3'- cCGCAUGGGUuuGuucua-UUCG-CCCG- -5'
24514 5' -49.7 NC_005264.1 + 125714 0.66 0.99828
Target:  5'- cGGCGccuggUGCCCcugugGAACGAGu--AGuUGGGCg -3'
miRNA:   3'- -CCGC-----AUGGG-----UUUGUUCuauUC-GCCCG- -5'
24514 5' -49.7 NC_005264.1 + 121167 0.66 0.99828
Target:  5'- uGCGagcauuaACCCAuGCGAGcAUAGaccccuGCGGGCa -3'
miRNA:   3'- cCGCa------UGGGUuUGUUC-UAUU------CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 110277 0.66 0.998249
Target:  5'- gGGCGauacguuUGCUCAAgaGCAAGGUGGuCGGGa -3'
miRNA:   3'- -CCGC-------AUGGGUU--UGUUCUAUUcGCCCg -5'
24514 5' -49.7 NC_005264.1 + 161192 0.66 0.99794
Target:  5'- uGGCGUaacGCCCGGAaaGAGAU-GGCaGGUu -3'
miRNA:   3'- -CCGCA---UGGGUUUg-UUCUAuUCGcCCG- -5'
24514 5' -49.7 NC_005264.1 + 42165 0.66 0.99794
Target:  5'- uGGCGUaacGCCCGGAaaGAGAU-GGCaGGUu -3'
miRNA:   3'- -CCGCA---UGGGUUUg-UUCUAuUCGcCCG- -5'
24514 5' -49.7 NC_005264.1 + 125129 0.66 0.99794
Target:  5'- cGGCGgcagACCCGGAUGacguccaucAGGUGcgGGaGGGCg -3'
miRNA:   3'- -CCGCa---UGGGUUUGU---------UCUAU--UCgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.