miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24517 5' -56.2 NC_005264.1 + 102204 0.66 0.924544
Target:  5'- gGCGgGGAucaagcugcUGCuccUGCGcGAGCCggCUGCCg -3'
miRNA:   3'- -UGUgCCU---------ACGc--ACGC-CUUGGa-GACGG- -5'
24517 5' -56.2 NC_005264.1 + 90953 0.66 0.924544
Target:  5'- aACACGGuguuUGCGU-CGGGcGCCcgCgUGCCg -3'
miRNA:   3'- -UGUGCCu---ACGCAcGCCU-UGGa-G-ACGG- -5'
24517 5' -56.2 NC_005264.1 + 66217 0.66 0.921272
Target:  5'- cCGCGGccaGCGaaggacuuggcgagcUGCGGGccuagcAUCUCUGCCa -3'
miRNA:   3'- uGUGCCua-CGC---------------ACGCCU------UGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 80745 0.66 0.919044
Target:  5'- uCGCGGAU-CGUGgGGAcaauCCUCgGCg -3'
miRNA:   3'- uGUGCCUAcGCACgCCUu---GGAGaCGg -5'
24517 5' -56.2 NC_005264.1 + 47198 0.66 0.907341
Target:  5'- cCugGGAUGa--GCGGGGCCacgGCCg -3'
miRNA:   3'- uGugCCUACgcaCGCCUUGGagaCGG- -5'
24517 5' -56.2 NC_005264.1 + 64283 0.66 0.904889
Target:  5'- uACGCGGGUGCcgaGUaucGCGGcccacagcgcguuGCCgCUGCCa -3'
miRNA:   3'- -UGUGCCUACG---CA---CGCCu------------UGGaGACGG- -5'
24517 5' -56.2 NC_005264.1 + 162173 0.66 0.904889
Target:  5'- aGCACGGGUggaGCGgggaggggggggcGCGuGAGCCUCUaucgcgcuGCCu -3'
miRNA:   3'- -UGUGCCUA---CGCa------------CGC-CUUGGAGA--------CGG- -5'
24517 5' -56.2 NC_005264.1 + 43146 0.66 0.904889
Target:  5'- aGCACGGGUggaGCGgggaggggggggcGCGuGAGCCUCUaucgcgcuGCCu -3'
miRNA:   3'- -UGUGCCUA---CGCa------------CGC-CUUGGAGA--------CGG- -5'
24517 5' -56.2 NC_005264.1 + 108600 0.66 0.901141
Target:  5'- gACACGuugGCGcGCGGGgccGCCUCgacacagGCCu -3'
miRNA:   3'- -UGUGCcuaCGCaCGCCU---UGGAGa------CGG- -5'
24517 5' -56.2 NC_005264.1 + 121641 0.66 0.901141
Target:  5'- gGCGCGagccGAgcagGCGggGCGGAGuCUUCUGUCu -3'
miRNA:   3'- -UGUGC----CUa---CGCa-CGCCUU-GGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 38352 0.66 0.901141
Target:  5'- uGCugGGcgGCGggGCGGuuagGACCUCcuccgGCg -3'
miRNA:   3'- -UGugCCuaCGCa-CGCC----UUGGAGa----CGg -5'
24517 5' -56.2 NC_005264.1 + 107715 0.66 0.901141
Target:  5'- cGCACGGcgGgGUGUcGAAcCCUCgugGCUu -3'
miRNA:   3'- -UGUGCCuaCgCACGcCUU-GGAGa--CGG- -5'
24517 5' -56.2 NC_005264.1 + 2614 0.66 0.901141
Target:  5'- gGCGCGagccGAgcagGCGggGCGGAGuCUUCUGUCu -3'
miRNA:   3'- -UGUGC----CUa---CGCa-CGCCUU-GGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 157379 0.66 0.901141
Target:  5'- uGCugGGcgGCGggGCGGuuagGACCUCcuccgGCg -3'
miRNA:   3'- -UGugCCuaCGCa-CGCC----UUGGAGa----CGg -5'
24517 5' -56.2 NC_005264.1 + 71627 0.66 0.894713
Target:  5'- -gGCGGcgGCagagauagcccaGUGCGcGAACCUgUGCg -3'
miRNA:   3'- ugUGCCuaCG------------CACGC-CUUGGAgACGg -5'
24517 5' -56.2 NC_005264.1 + 123033 0.66 0.894713
Target:  5'- -gGCGGAUGCGUGCcGcGCaUC-GCCa -3'
miRNA:   3'- ugUGCCUACGCACGcCuUGgAGaCGG- -5'
24517 5' -56.2 NC_005264.1 + 80207 0.66 0.894713
Target:  5'- gGCGCGGGacGUGUGUGaGAAgCUUggGCCg -3'
miRNA:   3'- -UGUGCCUa-CGCACGC-CUUgGAGa-CGG- -5'
24517 5' -56.2 NC_005264.1 + 155951 0.66 0.894713
Target:  5'- cGCugGGAcUGCGcggcucGCGGAcGCUcuggCUGCCg -3'
miRNA:   3'- -UGugCCU-ACGCa-----CGCCU-UGGa---GACGG- -5'
24517 5' -56.2 NC_005264.1 + 23676 0.67 0.888058
Target:  5'- aGCACGGAUuacgcaucGaCGUGCGGGAacgccgaccgacCCUCaacGCCc -3'
miRNA:   3'- -UGUGCCUA--------C-GCACGCCUU------------GGAGa--CGG- -5'
24517 5' -56.2 NC_005264.1 + 125463 0.67 0.888058
Target:  5'- uCGCGGcgGCGUcgcugGCGGAGaacuCCUCgGCg -3'
miRNA:   3'- uGUGCCuaCGCA-----CGCCUU----GGAGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.