miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 3' -63.4 NC_005264.1 + 37759 0.66 0.664379
Target:  5'- aCCUgCUGUCCUGCUUGagaCUCGCCUUCgCGc -3'
miRNA:   3'- -GGG-GGCAGGGUGAGC---GAGCGGGAG-GC- -5'
24520 3' -63.4 NC_005264.1 + 118711 0.66 0.664379
Target:  5'- -gCCC-UCCCGCUCGUaaUCGCCgcuaUCCc -3'
miRNA:   3'- ggGGGcAGGGUGAGCG--AGCGGg---AGGc -5'
24520 3' -63.4 NC_005264.1 + 156785 0.66 0.664379
Target:  5'- aCCUgCUGUCCUGCUUGagaCUCGCCUUCgCGc -3'
miRNA:   3'- -GGG-GGCAGGGUGAGC---GAGCGGGAG-GC- -5'
24520 3' -63.4 NC_005264.1 + 52979 0.66 0.649139
Target:  5'- gCUCUGUCCacuaGCUCGCgcUCGCgggcaaaauccucugCCUCCGc -3'
miRNA:   3'- gGGGGCAGGg---UGAGCG--AGCG---------------GGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 113222 0.66 0.645324
Target:  5'- cCCCCUGguacCCCAC-CGagCGCCCcCCGu -3'
miRNA:   3'- -GGGGGCa---GGGUGaGCgaGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 161432 0.66 0.645324
Target:  5'- aUCCCCGcuuauuUCCCcCUCugucCUCGCCaCUCCc -3'
miRNA:   3'- -GGGGGC------AGGGuGAGc---GAGCGG-GAGGc -5'
24520 3' -63.4 NC_005264.1 + 158350 0.66 0.645324
Target:  5'- cCCCCC--UCCGCUCGCga-CCCUCgCGc -3'
miRNA:   3'- -GGGGGcaGGGUGAGCGagcGGGAG-GC- -5'
24520 3' -63.4 NC_005264.1 + 153759 0.66 0.645324
Target:  5'- gCCCCag-CUgGCaUCGCUCGUCCUCa- -3'
miRNA:   3'- -GGGGgcaGGgUG-AGCGAGCGGGAGgc -5'
24520 3' -63.4 NC_005264.1 + 92085 0.66 0.645324
Target:  5'- aCCgCGUUguugCCGCUUGCUCGCCUguaCGc -3'
miRNA:   3'- gGGgGCAG----GGUGAGCGAGCGGGag-GC- -5'
24520 3' -63.4 NC_005264.1 + 39323 0.66 0.645324
Target:  5'- cCCCCC--UCCGCUCGCga-CCCUCgCGc -3'
miRNA:   3'- -GGGGGcaGGGUGAGCGagcGGGAG-GC- -5'
24520 3' -63.4 NC_005264.1 + 42405 0.66 0.645324
Target:  5'- aUCCCCGcuuauuUCCCcCUCugucCUCGCCaCUCCc -3'
miRNA:   3'- -GGGGGC------AGGGuGAGc---GAGCGG-GAGGc -5'
24520 3' -63.4 NC_005264.1 + 34733 0.66 0.645324
Target:  5'- gCCCCag-CUgGCaUCGCUCGUCCUCa- -3'
miRNA:   3'- -GGGGgcaGGgUG-AGCGAGCGGGAGgc -5'
24520 3' -63.4 NC_005264.1 + 27691 0.66 0.645324
Target:  5'- gCCUCUGcCUCGCcgaCGCUCGCUCUCa- -3'
miRNA:   3'- -GGGGGCaGGGUGa--GCGAGCGGGAGgc -5'
24520 3' -63.4 NC_005264.1 + 78662 0.66 0.635779
Target:  5'- gCCUCGUCCCACUaugUGCcggCG-UCUCCGu -3'
miRNA:   3'- gGGGGCAGGGUGA---GCGa--GCgGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 155065 0.66 0.635779
Target:  5'- uCCCagCGcCCC-CUCGCUCaguGCCCgacugCCGa -3'
miRNA:   3'- -GGGg-GCaGGGuGAGCGAG---CGGGa----GGC- -5'
24520 3' -63.4 NC_005264.1 + 36038 0.66 0.635779
Target:  5'- uCCCagCGcCCC-CUCGCUCaguGCCCgacugCCGa -3'
miRNA:   3'- -GGGg-GCaGGGuGAGCGAG---CGGGa----GGC- -5'
24520 3' -63.4 NC_005264.1 + 61960 0.66 0.626233
Target:  5'- gCCCCCGuagcauUCCCcCUCGUcgcgCGCCUggUCCc -3'
miRNA:   3'- -GGGGGC------AGGGuGAGCGa---GCGGG--AGGc -5'
24520 3' -63.4 NC_005264.1 + 160313 0.67 0.607157
Target:  5'- aCCCCCGUCUCGggaaG-UCGCCCcCCGc -3'
miRNA:   3'- -GGGGGCAGGGUgag-CgAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 41286 0.67 0.607157
Target:  5'- aCCCCCGUCUCGggaaG-UCGCCCcCCGc -3'
miRNA:   3'- -GGGGGCAGGGUgag-CgAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 19994 0.67 0.59764
Target:  5'- --aCCGaCCgCGCUCGCUCGCa-UCCGg -3'
miRNA:   3'- gggGGCaGG-GUGAGCGAGCGggAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.