miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 5' -52.6 NC_005264.1 + 87655 0.66 0.988892
Target:  5'- gCGCGGGACCUG--GCgGCaACGGGcagcugaaaggcgugUCCg -3'
miRNA:   3'- -GUGCUUUGGAUcuUGgCG-UGCCC---------------AGG- -5'
24520 5' -52.6 NC_005264.1 + 140553 0.66 0.98832
Target:  5'- gCugGGAugGCagaAGGGCgCGCGCGGGUUa -3'
miRNA:   3'- -GugCUU--UGga-UCUUG-GCGUGCCCAGg -5'
24520 5' -52.6 NC_005264.1 + 82268 0.66 0.98832
Target:  5'- gGCGgcACC-GGAGCgCGaa-GGGUCCg -3'
miRNA:   3'- gUGCuuUGGaUCUUG-GCgugCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 87197 0.66 0.98832
Target:  5'- -cUGGGACCUcauAACCGCAucUGGGUUCc -3'
miRNA:   3'- guGCUUUGGAuc-UUGGCGU--GCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 116270 0.66 0.98832
Target:  5'- aCGCGcGACUUGGaAGCCGUggcGCGGGcggCUa -3'
miRNA:   3'- -GUGCuUUGGAUC-UUGGCG---UGCCCa--GG- -5'
24520 5' -52.6 NC_005264.1 + 4241 0.66 0.98832
Target:  5'- aCGCGAAGguagaucaguCCcGGcuuGCCGCGCGGGaaCCg -3'
miRNA:   3'- -GUGCUUU----------GGaUCu--UGGCGUGCCCa-GG- -5'
24520 5' -52.6 NC_005264.1 + 123268 0.66 0.98832
Target:  5'- aCGCGAAGguagaucaguCCcGGcuuGCCGCGCGGGaaCCg -3'
miRNA:   3'- -GUGCUUU----------GGaUCu--UGGCGUGCCCa-GG- -5'
24520 5' -52.6 NC_005264.1 + 146065 0.66 0.98832
Target:  5'- uGCGuccGGCCc-GAAcagcgcgcccCCGCGCGGGUCUu -3'
miRNA:   3'- gUGCu--UUGGauCUU----------GGCGUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 79166 0.66 0.988173
Target:  5'- aCGCGcgGCCggaaacaauaaUGGAACUGCGCguagagaGGGUCg -3'
miRNA:   3'- -GUGCuuUGG-----------AUCUUGGCGUG-------CCCAGg -5'
24520 5' -52.6 NC_005264.1 + 144437 0.66 0.98742
Target:  5'- aACGAAacuguccguaucuccACgaAGGAUCGCGCGGGgagagaCCg -3'
miRNA:   3'- gUGCUU---------------UGgaUCUUGGCGUGCCCa-----GG- -5'
24520 5' -52.6 NC_005264.1 + 41568 0.66 0.986791
Target:  5'- uUugGggGCUgggGGAACCGCucgacgUGGcGUCUa -3'
miRNA:   3'- -GugCuuUGGa--UCUUGGCGu-----GCC-CAGG- -5'
24520 5' -52.6 NC_005264.1 + 75709 0.66 0.986791
Target:  5'- gCGCGAAGaCUGGugcGCCcCGCGGGcgCCg -3'
miRNA:   3'- -GUGCUUUgGAUCu--UGGcGUGCCCa-GG- -5'
24520 5' -52.6 NC_005264.1 + 94540 0.66 0.986791
Target:  5'- aGCGgcGCCgcacugAGAaauGCCGCugGGGa-- -3'
miRNA:   3'- gUGCuuUGGa-----UCU---UGGCGugCCCagg -5'
24520 5' -52.6 NC_005264.1 + 16080 0.66 0.985112
Target:  5'- gCGCGgcGCUUGcuGuuGC-CGGGUCCg -3'
miRNA:   3'- -GUGCuuUGGAUcuUggCGuGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 103378 0.66 0.985112
Target:  5'- -uCGucauGCCU---GCCGCGCGGGgCCg -3'
miRNA:   3'- guGCuu--UGGAucuUGGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 104806 0.66 0.985112
Target:  5'- uCGCGAGACgagcgGGcGCCGCACGacggccuGUCCg -3'
miRNA:   3'- -GUGCUUUGga---UCuUGGCGUGCc------CAGG- -5'
24520 5' -52.6 NC_005264.1 + 49213 0.66 0.985112
Target:  5'- cCGCGcuACCUGGAAaCGCgACaGGUCa -3'
miRNA:   3'- -GUGCuuUGGAUCUUgGCG-UGcCCAGg -5'
24520 5' -52.6 NC_005264.1 + 36216 0.66 0.985112
Target:  5'- gCGCGcAGACC-AGAGCC-CGCGaGGUUUa -3'
miRNA:   3'- -GUGC-UUUGGaUCUUGGcGUGC-CCAGG- -5'
24520 5' -52.6 NC_005264.1 + 155243 0.66 0.985112
Target:  5'- gCGCGcAGACC-AGAGCC-CGCGaGGUUUa -3'
miRNA:   3'- -GUGC-UUUGGaUCUUGGcGUGC-CCAGG- -5'
24520 5' -52.6 NC_005264.1 + 138448 0.66 0.985112
Target:  5'- uCGCGAucuACCUc--GCCGC-CGGGggagCCg -3'
miRNA:   3'- -GUGCUu--UGGAucuUGGCGuGCCCa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.