miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24527 3' -60.8 NC_005264.1 + 120307 0.66 0.747387
Target:  5'- cGCGCGgaagcugCGCCCaCGCCaCacaucaggccacaguGCUACAGAa -3'
miRNA:   3'- -UGCGCa------GCGGGcGCGGaG---------------CGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 144432 0.67 0.676475
Target:  5'- -gGCG-CGCCUGCGCCggcCGgaACGGu -3'
miRNA:   3'- ugCGCaGCGGGCGCGGa--GCgaUGUCu -5'
24527 3' -60.8 NC_005264.1 + 30862 0.67 0.656857
Target:  5'- gGCGCGcCGCCCgguaggcaacgGCGUCUCGau-CGGGg -3'
miRNA:   3'- -UGCGCaGCGGG-----------CGCGGAGCgauGUCU- -5'
24527 3' -60.8 NC_005264.1 + 9552 1.08 0.001355
Target:  5'- gACGCGUCGCCCGCGCCUCGCUACAGAa -3'
miRNA:   3'- -UGCGCAGCGGGCGCGGAGCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 91007 0.66 0.734264
Target:  5'- aACGCGUCGUuauUCGCGaCCcCGCggGCGGc -3'
miRNA:   3'- -UGCGCAGCG---GGCGC-GGaGCGa-UGUCu -5'
24527 3' -60.8 NC_005264.1 + 162232 0.66 0.734264
Target:  5'- -aGCGaaCGCCaccguaGuCGCCUCGCUGcCGGAg -3'
miRNA:   3'- ugCGCa-GCGGg-----C-GCGGAGCGAU-GUCU- -5'
24527 3' -60.8 NC_005264.1 + 92149 0.66 0.723838
Target:  5'- cGCGCuGUCGCCCGCgggcguaaaaauuGCCU-GCcgGCGGc -3'
miRNA:   3'- -UGCG-CAGCGGGCG-------------CGGAgCGa-UGUCu -5'
24527 3' -60.8 NC_005264.1 + 96336 0.66 0.715242
Target:  5'- cACGC-UCGCuguaCCGCGCCaUCGCcggcACGGGa -3'
miRNA:   3'- -UGCGcAGCG----GGCGCGG-AGCGa---UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 94768 0.66 0.712365
Target:  5'- gACGCGaUCGCaaaguuccccgaucUCGcCGCCUCGUcggGCAGGa -3'
miRNA:   3'- -UGCGC-AGCG--------------GGC-GCGGAGCGa--UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 126030 0.67 0.676475
Target:  5'- cGCGCcUCGCCUGCGCC-----GCAGAg -3'
miRNA:   3'- -UGCGcAGCGGGCGCGGagcgaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 156082 0.66 0.695957
Target:  5'- uGCGCGaauacaUCGaugaacacuuCCCGCGCCaCGCcGCGGAg -3'
miRNA:   3'- -UGCGC------AGC----------GGGCGCGGaGCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 36493 0.66 0.715242
Target:  5'- gACGCGggaUCuCCCGCGgCUCGUUccCAGAg -3'
miRNA:   3'- -UGCGC---AGcGGGCGCgGAGCGAu-GUCU- -5'
24527 3' -60.8 NC_005264.1 + 39733 0.66 0.743655
Target:  5'- cGCGaCGcCGCCCGUgcaacaGCCcCGCUGuCGGGa -3'
miRNA:   3'- -UGC-GCaGCGGGCG------CGGaGCGAU-GUCU- -5'
24527 3' -60.8 NC_005264.1 + 60544 0.66 0.695957
Target:  5'- uGCGCucuggcaCGCCUGUGCCcguuUCGCUGCAc- -3'
miRNA:   3'- -UGCGca-----GCGGGCGCGG----AGCGAUGUcu -5'
24527 3' -60.8 NC_005264.1 + 49202 0.66 0.743655
Target:  5'- aGCGCucaCGCCCGCGCUaccuggaaaCGCgACAGGu -3'
miRNA:   3'- -UGCGca-GCGGGCGCGGa--------GCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 79223 0.66 0.715242
Target:  5'- -aGCGUCGCuuG-GCCgugCGCUACc-- -3'
miRNA:   3'- ugCGCAGCGggCgCGGa--GCGAUGucu -5'
24527 3' -60.8 NC_005264.1 + 1196 0.66 0.695957
Target:  5'- -aGCGgaccgggCGUCCGCgGCCaUgGCUGCGGGg -3'
miRNA:   3'- ugCGCa------GCGGGCG-CGG-AgCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 82370 0.67 0.656857
Target:  5'- gGCGCGUCGauCCgGUGCCggGC-GCAGGg -3'
miRNA:   3'- -UGCGCAGC--GGgCGCGGagCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 90964 0.66 0.743655
Target:  5'- uGCGuCGggCGCCCGCGUgcCGUcGCGGAa -3'
miRNA:   3'- -UGC-GCa-GCGGGCGCGgaGCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 6148 0.66 0.72479
Target:  5'- cCGCG-CGCCCGuCGCgcaUCGCgUGCAcGAu -3'
miRNA:   3'- uGCGCaGCGGGC-GCGg--AGCG-AUGU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.