miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24530 3' -60.2 NC_005264.1 + 110857 0.66 0.764427
Target:  5'- gUCCUCUcggcgaagaUCGAGCGUgagCGCgCcgacacgacgcguuaGCGGCACc -3'
miRNA:   3'- -AGGAGA---------AGCUCGCG---GCGaG---------------CGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 125488 0.66 0.760739
Target:  5'- cUCCUCggCG-GCGCgGCgaacgUCGgGGUGCg -3'
miRNA:   3'- -AGGAGaaGCuCGCGgCG-----AGCgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 136467 0.66 0.760739
Target:  5'- -gCUCagagaCG-GCGCCGCgcagccugcCGCGGCGCa -3'
miRNA:   3'- agGAGaa---GCuCGCGGCGa--------GCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 6461 0.66 0.760739
Target:  5'- cUCCUCggCG-GCGCgGCgaacgUCGgGGUGCg -3'
miRNA:   3'- -AGGAGaaGCuCGCGgCG-----AGCgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 65651 0.66 0.760739
Target:  5'- gUCCUCguaGAGCuuguCCGcCUCGgCGGCAa -3'
miRNA:   3'- -AGGAGaagCUCGc---GGC-GAGC-GCCGUg -5'
24530 3' -60.2 NC_005264.1 + 116411 0.66 0.757033
Target:  5'- gCCgacgUCGAGCGCagggcggcgugcaGcCUCGCGGCGg -3'
miRNA:   3'- aGGaga-AGCUCGCGg------------C-GAGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 130985 0.66 0.755174
Target:  5'- gCCUga-CGAGgucgcgcccaugucuUGCCGCgCGCGGCACg -3'
miRNA:   3'- aGGAgaaGCUC---------------GCGGCGaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 55172 0.66 0.751443
Target:  5'- gCCUCU--GGGCGCgGCUgaagGCGGCGa -3'
miRNA:   3'- aGGAGAagCUCGCGgCGAg---CGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 159763 0.66 0.751443
Target:  5'- gUCCUC----GGcCGCCGCcagUCGCGGCGa -3'
miRNA:   3'- -AGGAGaagcUC-GCGGCG---AGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 40737 0.66 0.751443
Target:  5'- gUCCUC----GGcCGCCGCcagUCGCGGCGa -3'
miRNA:   3'- -AGGAGaagcUC-GCGGCG---AGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 11959 0.66 0.748635
Target:  5'- gCCUga-CGAGgucgcgccaugucuUGCCGCgCGCGGCACg -3'
miRNA:   3'- aGGAgaaGCUC--------------GCGGCGaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 91545 0.66 0.742049
Target:  5'- -gCUCgcgcauaUCGGGCGCgGCggGgGGCACg -3'
miRNA:   3'- agGAGa------AGCUCGCGgCGagCgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 124178 0.66 0.742049
Target:  5'- ------aUGGGCGCCGC-CGCGGC-Ca -3'
miRNA:   3'- aggagaaGCUCGCGGCGaGCGCCGuG- -5'
24530 3' -60.2 NC_005264.1 + 60271 0.66 0.742049
Target:  5'- gCUgCggUGAGCGCCGCgUCG-GGCAUg -3'
miRNA:   3'- aGGaGaaGCUCGCGGCG-AGCgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 55328 0.66 0.742049
Target:  5'- -aCUUUUCacguGCGCguuguCGCUCGCGGCGg -3'
miRNA:   3'- agGAGAAGcu--CGCG-----GCGAGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 30071 0.66 0.732564
Target:  5'- cCCUCgUCG-GCGCCGC-CGCGcccGgACa -3'
miRNA:   3'- aGGAGaAGCuCGCGGCGaGCGC---CgUG- -5'
24530 3' -60.2 NC_005264.1 + 129556 0.66 0.732564
Target:  5'- gUCCUgUgCG-GCGCCGCccUCaGgGGCGCg -3'
miRNA:   3'- -AGGAgAaGCuCGCGGCG--AG-CgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 10529 0.66 0.732564
Target:  5'- gUCCUgUgCG-GCGCCGCccUCaGgGGCGCg -3'
miRNA:   3'- -AGGAgAaGCuCGCGGCG--AG-CgCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 56587 0.66 0.722997
Target:  5'- gUCCUUUUCuGGCGCUaCgCGCGGCcCa -3'
miRNA:   3'- -AGGAGAAGcUCGCGGcGaGCGCCGuG- -5'
24530 3' -60.2 NC_005264.1 + 155945 0.66 0.722997
Target:  5'- gCCgcgcgCUggGAcuGCGCgGCUCGCGGaCGCu -3'
miRNA:   3'- aGGa----GAagCU--CGCGgCGAGCGCC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.