miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 41133 0.66 0.975223
Target:  5'- aCGaGCA--AgCCGCGCGAugCggGUCUg -3'
miRNA:   3'- -GCaCGUauUgGGCGCGCUugGa-CAGG- -5'
24546 3' -53.8 NC_005264.1 + 85200 0.66 0.975223
Target:  5'- gCGgcaCAUGGCCUGCGacaaGAacaACCgUGUCCg -3'
miRNA:   3'- -GCac-GUAUUGGGCGCg---CU---UGG-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 105679 0.66 0.975223
Target:  5'- --gGCGUuuAGCCC-CGCGAACgUGggugCCg -3'
miRNA:   3'- gcaCGUA--UUGGGcGCGCUUGgACa---GG- -5'
24546 3' -53.8 NC_005264.1 + 107049 0.66 0.975223
Target:  5'- uCGUGCccgcccAUGACCC-CGCagauGAACgaGUCCc -3'
miRNA:   3'- -GCACG------UAUUGGGcGCG----CUUGgaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 106611 0.66 0.975223
Target:  5'- uCGUGCAggaucuucgugAGCCCGCG-GuGCUUG-CCg -3'
miRNA:   3'- -GCACGUa----------UUGGGCGCgCuUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 117315 0.66 0.975223
Target:  5'- gCGUGCGacugagaAGCgUGCGCGggUC-GUCCc -3'
miRNA:   3'- -GCACGUa------UUGgGCGCGCuuGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 39447 0.66 0.975223
Target:  5'- --cGCGU-ACCCG-GCGA-CCcGUCCa -3'
miRNA:   3'- gcaCGUAuUGGGCgCGCUuGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 53249 0.66 0.975223
Target:  5'- cCGUGC----CCCGCGgGcGCgUGUCUg -3'
miRNA:   3'- -GCACGuauuGGGCGCgCuUGgACAGG- -5'
24546 3' -53.8 NC_005264.1 + 146101 0.66 0.972573
Target:  5'- --cGCGcUGACCCGcCGCcGGAgCUGuUCCa -3'
miRNA:   3'- gcaCGU-AUUGGGC-GCG-CUUgGAC-AGG- -5'
24546 3' -53.8 NC_005264.1 + 131321 0.66 0.969725
Target:  5'- aCG-GCccucCCCGCcCGAGCCUGgagCCg -3'
miRNA:   3'- -GCaCGuauuGGGCGcGCUUGGACa--GG- -5'
24546 3' -53.8 NC_005264.1 + 79648 0.66 0.969725
Target:  5'- --cGCAUAGuuCGCGCcGcGCCUG-CCg -3'
miRNA:   3'- gcaCGUAUUggGCGCG-CuUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 82201 0.66 0.969725
Target:  5'- cCGUGuCGUGG-CCGCGCGu-CCaucGUCCu -3'
miRNA:   3'- -GCAC-GUAUUgGGCGCGCuuGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 66134 0.66 0.969725
Target:  5'- --gGCAUGGCggCGCGCGAGggcgcggcaaauCCUGUCa -3'
miRNA:   3'- gcaCGUAUUGg-GCGCGCUU------------GGACAGg -5'
24546 3' -53.8 NC_005264.1 + 150732 0.66 0.969725
Target:  5'- aCG-GCccucCCCGCcCGAGCCUGgagCCg -3'
miRNA:   3'- -GCaCGuauuGGGCGcGCUUGGACa--GG- -5'
24546 3' -53.8 NC_005264.1 + 22699 0.66 0.969725
Target:  5'- -aUGCAUuACCUGCGgGGGCCcagagaUGcCCg -3'
miRNA:   3'- gcACGUAuUGGGCGCgCUUGG------ACaGG- -5'
24546 3' -53.8 NC_005264.1 + 76000 0.66 0.966671
Target:  5'- --cGCAUAAUCgGCGUGAGCacguUCCa -3'
miRNA:   3'- gcaCGUAUUGGgCGCGCUUGgac-AGG- -5'
24546 3' -53.8 NC_005264.1 + 54993 0.66 0.963406
Target:  5'- -uUGCGUGgaacACCCG-GCGAcuaugacgGCCUGcCCg -3'
miRNA:   3'- gcACGUAU----UGGGCgCGCU--------UGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 89513 0.66 0.96204
Target:  5'- uCGUGCAgagagcggcaggcGGCCUauugauugGCGCGGGCagUGUCCg -3'
miRNA:   3'- -GCACGUa------------UUGGG--------CGCGCUUGg-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 52128 0.67 0.959925
Target:  5'- aGUGCGUGuUCCaGCGCGAuacaauUCaGUCCg -3'
miRNA:   3'- gCACGUAUuGGG-CGCGCUu-----GGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 75219 0.67 0.956222
Target:  5'- -cUGCAUcGGCCCuGCGCGGcgGCC-GUCUu -3'
miRNA:   3'- gcACGUA-UUGGG-CGCGCU--UGGaCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.