miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 112175 0.66 0.89801
Target:  5'- -aGAuGGGCGAGuuugCUGCuaGCGUAGUACu -3'
miRNA:   3'- ggCU-CUCGCUCug--GACG--CGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 27436 0.66 0.89801
Target:  5'- aUGAGgcuuucAGCcAGACCUGCGCcgagcGGCGCa -3'
miRNA:   3'- gGCUC------UCGcUCUGGACGCGca---UCGUG- -5'
24575 3' -57 NC_005264.1 + 67630 0.66 0.896084
Target:  5'- aCGcGGGCGcAGGgguguCCUGCGCGgcccgucuucguuaUGGCACg -3'
miRNA:   3'- gGCuCUCGC-UCU-----GGACGCGC--------------AUCGUG- -5'
24575 3' -57 NC_005264.1 + 149647 0.66 0.891512
Target:  5'- gCGGcGGCGAcgGAUCcGCGCGcAGCGCg -3'
miRNA:   3'- gGCUcUCGCU--CUGGaCGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 30620 0.66 0.891512
Target:  5'- gCGGcGGCGAcgGAUCcGCGCGcAGCGCg -3'
miRNA:   3'- gGCUcUCGCU--CUGGaCGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 97717 0.66 0.891512
Target:  5'- aCCGAGGGCuuGGCgU-CGCGUucaccggaggccGGCACg -3'
miRNA:   3'- -GGCUCUCGcuCUGgAcGCGCA------------UCGUG- -5'
24575 3' -57 NC_005264.1 + 152673 0.66 0.884793
Target:  5'- aCGAGGGCuGGGACCaaGCGgGggcgGGUAUg -3'
miRNA:   3'- gGCUCUCG-CUCUGGa-CGCgCa---UCGUG- -5'
24575 3' -57 NC_005264.1 + 76243 0.66 0.884793
Target:  5'- gCGAGGcGCGAcGACC-GCGUGUcuCACg -3'
miRNA:   3'- gGCUCU-CGCU-CUGGaCGCGCAucGUG- -5'
24575 3' -57 NC_005264.1 + 75194 0.66 0.880657
Target:  5'- gUCGGGGGCGAGAUugUUGaCGUGcagaggguuugccucUGGCGCg -3'
miRNA:   3'- -GGCUCUCGCUCUG--GAC-GCGC---------------AUCGUG- -5'
24575 3' -57 NC_005264.1 + 6314 0.66 0.877856
Target:  5'- gCGc-GGCGAGGCUU-CGCGUGGCGu -3'
miRNA:   3'- gGCucUCGCUCUGGAcGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 16472 0.66 0.877151
Target:  5'- uCCGAcGAcgcagccGCGGuGGCCUGCGgGgucgaGGCACg -3'
miRNA:   3'- -GGCU-CU-------CGCU-CUGGACGCgCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 102197 0.66 0.875734
Target:  5'- aCGAGcaGGCGGGGaucaagcugcugcuCCUGCGCG-AGC-Cg -3'
miRNA:   3'- gGCUC--UCGCUCU--------------GGACGCGCaUCGuG- -5'
24575 3' -57 NC_005264.1 + 88664 0.66 0.870707
Target:  5'- gCGAGAGCcAGucaauCUUGCGCcGUauGGCACc -3'
miRNA:   3'- gGCUCUCGcUCu----GGACGCG-CA--UCGUG- -5'
24575 3' -57 NC_005264.1 + 38829 0.66 0.870707
Target:  5'- aCGAGAaCGAcGACgaUGCGCG-GGCACc -3'
miRNA:   3'- gGCUCUcGCU-CUGg-ACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 56897 0.66 0.870707
Target:  5'- aCCGGGAacuggGCGAGcauuauggggcgGCgUacGUGCGUGGCGCa -3'
miRNA:   3'- -GGCUCU-----CGCUC------------UGgA--CGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 52100 0.66 0.870707
Target:  5'- uUGAGGGCGAcgucaGACauaGCGCGUgAGUGCg -3'
miRNA:   3'- gGCUCUCGCU-----CUGga-CGCGCA-UCGUG- -5'
24575 3' -57 NC_005264.1 + 157855 0.66 0.870707
Target:  5'- aCGAGAaCGAcGACgaUGCGCG-GGCACc -3'
miRNA:   3'- gGCUCUcGCU-CUGg-ACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 153911 0.67 0.863349
Target:  5'- gCCGAGAaacuguuccGCGAGuACCUgaagacGCGCGUcuccAGCGa -3'
miRNA:   3'- -GGCUCU---------CGCUC-UGGA------CGCGCA----UCGUg -5'
24575 3' -57 NC_005264.1 + 47600 0.67 0.863349
Target:  5'- gCGuuGGGgGAGACUcGCGCGaacGGCGCg -3'
miRNA:   3'- gGCu-CUCgCUCUGGaCGCGCa--UCGUG- -5'
24575 3' -57 NC_005264.1 + 158600 0.67 0.848032
Target:  5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3'
miRNA:   3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.