miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 5' -53.8 NC_005264.1 + 9920 0.66 0.974824
Target:  5'- gCGGCGCUaucUCGCGCuAGGU---UCgaaGCa -3'
miRNA:   3'- -GCUGCGA---AGCGCG-UCCAgauAGag-CG- -5'
24575 5' -53.8 NC_005264.1 + 128946 0.66 0.974824
Target:  5'- gCGGCGCUaucUCGCGCuAGGU---UCgaaGCa -3'
miRNA:   3'- -GCUGCGA---AGCGCG-UCCAgauAGag-CG- -5'
24575 5' -53.8 NC_005264.1 + 153817 0.66 0.972142
Target:  5'- aGGCGCgaaCGCGuCGGGaCUAacggcggCUCGCc -3'
miRNA:   3'- gCUGCGaa-GCGC-GUCCaGAUa------GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 8631 0.66 0.972142
Target:  5'- aGGCGCUUCacCGCcacGUCUacGUUUCGCg -3'
miRNA:   3'- gCUGCGAAGc-GCGuc-CAGA--UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 74718 0.66 0.972142
Target:  5'- gGGCGCggCGCGCGaaaCUGUCUCcuGCu -3'
miRNA:   3'- gCUGCGaaGCGCGUccaGAUAGAG--CG- -5'
24575 5' -53.8 NC_005264.1 + 78558 0.66 0.972142
Target:  5'- -cGCGCUUUGCGCGucgcuuuugCUGUgUCGCa -3'
miRNA:   3'- gcUGCGAAGCGCGUcca------GAUAgAGCG- -5'
24575 5' -53.8 NC_005264.1 + 64055 0.66 0.972142
Target:  5'- cCGAUcg-UCGCGCAGcUCUGUCagcCGCa -3'
miRNA:   3'- -GCUGcgaAGCGCGUCcAGAUAGa--GCG- -5'
24575 5' -53.8 NC_005264.1 + 91198 0.66 0.972142
Target:  5'- -cACGCacaggUUCGCGCAcuGGgCUAUCUCuGCc -3'
miRNA:   3'- gcUGCG-----AAGCGCGU--CCaGAUAGAG-CG- -5'
24575 5' -53.8 NC_005264.1 + 88475 0.66 0.972142
Target:  5'- aCGACGCcgUUGUGU-GGaUUGUCUCGUc -3'
miRNA:   3'- -GCUGCGa-AGCGCGuCCaGAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 59772 0.66 0.971298
Target:  5'- gGACGCUUCGCgggacucgucgcccGCAGGgggCg--CguagCGCa -3'
miRNA:   3'- gCUGCGAAGCG--------------CGUCCa--GauaGa---GCG- -5'
24575 5' -53.8 NC_005264.1 + 135394 0.66 0.96926
Target:  5'- gCGcCGCUcgGCGCAGGUCUggCUgaaaGCc -3'
miRNA:   3'- -GCuGCGAagCGCGUCCAGAuaGAg---CG- -5'
24575 5' -53.8 NC_005264.1 + 157705 0.66 0.96926
Target:  5'- gCGACGCccccgUCGUaauuuccuacGUAGGUCccagCUCGCc -3'
miRNA:   3'- -GCUGCGa----AGCG----------CGUCCAGaua-GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 38679 0.66 0.96926
Target:  5'- gCGACGCccccgUCGUaauuuccuacGUAGGUCccagCUCGCc -3'
miRNA:   3'- -GCUGCGa----AGCG----------CGUCCAGaua-GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 5383 0.66 0.96896
Target:  5'- cCGGCGCUcgaUUGCuugccaggggccaGCAGGgcguacgcggcaUCUGUCUCGg -3'
miRNA:   3'- -GCUGCGA---AGCG-------------CGUCC------------AGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 124410 0.66 0.96896
Target:  5'- cCGGCGCUcgaUUGCuugccaggggccaGCAGGgcguacgcggcaUCUGUCUCGg -3'
miRNA:   3'- -GCUGCGA---AGCG-------------CGUCC------------AGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 58121 0.66 0.966171
Target:  5'- aGAUGUUccUUGCGUAGGUUUuUCaCGCg -3'
miRNA:   3'- gCUGCGA--AGCGCGUCCAGAuAGaGCG- -5'
24575 5' -53.8 NC_005264.1 + 89958 0.66 0.966171
Target:  5'- gCGGcCGCUggCGCGUAGaacugUUGUCUUGCg -3'
miRNA:   3'- -GCU-GCGAa-GCGCGUCca---GAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 48687 0.66 0.96287
Target:  5'- gGGCGCgagucugcUCGuCGC-GGUCg--CUCGCg -3'
miRNA:   3'- gCUGCGa-------AGC-GCGuCCAGauaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 146081 0.67 0.959351
Target:  5'- -aGCGCgccccCGCGCGGGUCUugguggaCUaCGCa -3'
miRNA:   3'- gcUGCGaa---GCGCGUCCAGAua-----GA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 93260 0.67 0.959351
Target:  5'- uCGGCGCgUUCGCGCaaccugaauAGGUCgGUCagauUCGg -3'
miRNA:   3'- -GCUGCG-AAGCGCG---------UCCAGaUAG----AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.