miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 3' -59.9 NC_005264.1 + 21566 0.66 0.760967
Target:  5'- gGGGGUUGGgGCaggcaUGCUagUACCGUCGGCg -3'
miRNA:   3'- aCCUCAACCgCG-----ACGG--GUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 17278 0.66 0.751603
Target:  5'- cGGAGgcgacggGGCggaggGCUGCCCAUCuaACUGAa -3'
miRNA:   3'- aCCUCaa-----CCG-----CGACGGGUGG--UGGCUg -5'
24600 3' -59.9 NC_005264.1 + 12146 0.66 0.751603
Target:  5'- ------cGGCGCUGCCCGuuGCUGGg -3'
miRNA:   3'- accucaaCCGCGACGGGUggUGGCUg -5'
24600 3' -59.9 NC_005264.1 + 78506 0.66 0.751603
Target:  5'- cGGuGUUGGCaccgcGCUGgguaCgCGCCGCUGGCg -3'
miRNA:   3'- aCCuCAACCG-----CGACg---G-GUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 96201 0.66 0.751603
Target:  5'- aGGAGUcguauUGGCaGCuUGCCUcggGCCgcgacggcGCCGGCa -3'
miRNA:   3'- aCCUCA-----ACCG-CG-ACGGG---UGG--------UGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 102731 0.66 0.742138
Target:  5'- cGGAaaaaGUcgcGGCGUUGUggGCCGCCGGCa -3'
miRNA:   3'- aCCU----CAa--CCGCGACGggUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 133716 0.66 0.742138
Target:  5'- -----cUGGUGCUGCCUcUgGCCGACa -3'
miRNA:   3'- accucaACCGCGACGGGuGgUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 127034 0.66 0.732581
Target:  5'- cGGGGccGGCagagGC-GCCCGCCACgaCGGCg -3'
miRNA:   3'- aCCUCaaCCG----CGaCGGGUGGUG--GCUG- -5'
24600 3' -59.9 NC_005264.1 + 8007 0.66 0.732581
Target:  5'- cGGGGccGGCagagGC-GCCCGCCACgaCGGCg -3'
miRNA:   3'- aCCUCaaCCG----CGaCGGGUGGUG--GCUG- -5'
24600 3' -59.9 NC_005264.1 + 91470 0.66 0.722941
Target:  5'- cGGAuaacGUGUUGCCCACCuggccuCCGGCu -3'
miRNA:   3'- aCCUcaacCGCGACGGGUGGu-----GGCUG- -5'
24600 3' -59.9 NC_005264.1 + 106585 0.66 0.722941
Target:  5'- cGGAGga--CGaUGCCCGCCACCucGACa -3'
miRNA:   3'- aCCUCaaccGCgACGGGUGGUGG--CUG- -5'
24600 3' -59.9 NC_005264.1 + 109761 0.66 0.722941
Target:  5'- cGGAGgcacagGGgGCUaaacgGUCUGCUGCCGACg -3'
miRNA:   3'- aCCUCaa----CCgCGA-----CGGGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 75385 0.66 0.722941
Target:  5'- cGGAGUcgUGGUGCgcgccaccgucUGCgCgGCCGCgGGCa -3'
miRNA:   3'- aCCUCA--ACCGCG-----------ACG-GgUGGUGgCUG- -5'
24600 3' -59.9 NC_005264.1 + 158084 0.66 0.721972
Target:  5'- -cGAGUUcGCGCggcgGUCCACCcccggacGCCGGCu -3'
miRNA:   3'- acCUCAAcCGCGa---CGGGUGG-------UGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 39057 0.66 0.721972
Target:  5'- -cGAGUUcGCGCggcgGUCCACCcccggacGCCGGCu -3'
miRNA:   3'- acCUCAAcCGCGa---CGGGUGG-------UGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 153260 0.66 0.713226
Target:  5'- gGGGGgacuacugcgGGCGacguuuuacCUGCuagCCGCCACCGGCu -3'
miRNA:   3'- aCCUCaa--------CCGC---------GACG---GGUGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 136651 0.67 0.703444
Target:  5'- gGGaAGUggGGCGCcaacGgCC-CCGCCGACa -3'
miRNA:   3'- aCC-UCAa-CCGCGa---CgGGuGGUGGCUG- -5'
24600 3' -59.9 NC_005264.1 + 74675 0.67 0.703444
Target:  5'- -uGAGcUGGUGCguuaGCgCCACCGgCGACg -3'
miRNA:   3'- acCUCaACCGCGa---CG-GGUGGUgGCUG- -5'
24600 3' -59.9 NC_005264.1 + 162465 0.67 0.703444
Target:  5'- ------cGGCGCUGCCCcCCAaaGACc -3'
miRNA:   3'- accucaaCCGCGACGGGuGGUggCUG- -5'
24600 3' -59.9 NC_005264.1 + 149586 0.67 0.703444
Target:  5'- cGGAGggGG-GCUGCUCGauGCCGAg -3'
miRNA:   3'- aCCUCaaCCgCGACGGGUggUGGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.