miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 3' -53.8 NC_005264.1 + 34082 0.66 0.957829
Target:  5'- gCCcGCAGUuuGC-CGCGGCGg---- -3'
miRNA:   3'- aGGuCGUCAuuCGcGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 130442 0.66 0.957829
Target:  5'- uUCCAGCAcaAAGU-CGCGGCGg---- -3'
miRNA:   3'- -AGGUCGUcaUUCGcGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 136773 0.66 0.957829
Target:  5'- aCCAGCccAGUGaguccuuucGGCGCGUGGCc----- -3'
miRNA:   3'- aGGUCG--UCAU---------UCGCGCGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 153109 0.66 0.957829
Target:  5'- gCCcGCAGUuuGC-CGCGGCGg---- -3'
miRNA:   3'- aGGuCGUCAuuCGcGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 139295 0.66 0.957829
Target:  5'- aUCC-GCGGU-AGCGCGUaGCGUUc-- -3'
miRNA:   3'- -AGGuCGUCAuUCGCGCGcCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 11415 0.66 0.957829
Target:  5'- uUCCAGCAcaAAGU-CGCGGCGg---- -3'
miRNA:   3'- -AGGUCGUcaUUCGcGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 90097 0.66 0.955497
Target:  5'- cCCAGCGGacAGGCccgccgaaguguaccGCGUGGCGUg--- -3'
miRNA:   3'- aGGUCGUCa-UUCG---------------CGCGCCGCAaaua -5'
24601 3' -53.8 NC_005264.1 + 5984 0.66 0.953895
Target:  5'- gCCAGUAcauuAGCaGCGCGGCGg---- -3'
miRNA:   3'- aGGUCGUcau-UCG-CGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 5407 0.66 0.953895
Target:  5'- gCCAGCAG--GGCGUacGCGGCa----- -3'
miRNA:   3'- aGGUCGUCauUCGCG--CGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 124434 0.66 0.953895
Target:  5'- gCCAGCAG--GGCGUacGCGGCa----- -3'
miRNA:   3'- aGGUCGUCauUCGCG--CGCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 48383 0.66 0.949721
Target:  5'- gCCGGUAGacugGGGCGUcggGCGGCGg---- -3'
miRNA:   3'- aGGUCGUCa---UUCGCG---CGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 95465 0.66 0.949721
Target:  5'- gCCGGCGGgcgcagcGAGCGCG-GGCGc---- -3'
miRNA:   3'- aGGUCGUCa------UUCGCGCgCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 91903 0.66 0.945302
Target:  5'- -gCGGCAGcgaUGGGCggGCGCGGCGa---- -3'
miRNA:   3'- agGUCGUC---AUUCG--CGCGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 66689 0.66 0.945302
Target:  5'- aCCGGCGccGGGCGgGgGGCGUa--- -3'
miRNA:   3'- aGGUCGUcaUUCGCgCgCCGCAaaua -5'
24601 3' -53.8 NC_005264.1 + 110682 0.66 0.940637
Target:  5'- uUCCAGUAGaGAGCGUGgGGUc----- -3'
miRNA:   3'- -AGGUCGUCaUUCGCGCgCCGcaaaua -5'
24601 3' -53.8 NC_005264.1 + 130538 0.66 0.940637
Target:  5'- aCCuGCGcgAAGCGuCGCGGCGcgUGUg -3'
miRNA:   3'- aGGuCGUcaUUCGC-GCGCCGCaaAUA- -5'
24601 3' -53.8 NC_005264.1 + 54891 0.66 0.940157
Target:  5'- gCCaAGUcacucugGGUAAGCGCGuCGGCGg---- -3'
miRNA:   3'- aGG-UCG-------UCAUUCGCGC-GCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 150698 0.67 0.935722
Target:  5'- cCCAGCaacGGgcAGCGC-CGGCGg---- -3'
miRNA:   3'- aGGUCG---UCauUCGCGcGCCGCaaaua -5'
24601 3' -53.8 NC_005264.1 + 96642 0.67 0.934709
Target:  5'- -gCGGCaAGUucaaaaccgucGCGCGCGGCGUUa-- -3'
miRNA:   3'- agGUCG-UCAuu---------CGCGCGCCGCAAaua -5'
24601 3' -53.8 NC_005264.1 + 54581 0.67 0.934198
Target:  5'- gCCAGCuAGUGAGCGUGgucaacgccggccuCGGCGcgUGc -3'
miRNA:   3'- aGGUCG-UCAUUCGCGC--------------GCCGCaaAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.