miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24616 3' -55.6 NC_005264.1 + 110054 0.66 0.943472
Target:  5'- aCGcGAGCGGCGCGaaagCAucGCUCCa-- -3'
miRNA:   3'- cGCaCUUGCCGCGCaa--GU--CGAGGcag -5'
24616 3' -55.6 NC_005264.1 + 50494 0.66 0.943472
Target:  5'- aCGUGGccACGGcCGCGgcCAGUUCUGcCu -3'
miRNA:   3'- cGCACU--UGCC-GCGCaaGUCGAGGCaG- -5'
24616 3' -55.6 NC_005264.1 + 46590 0.66 0.942116
Target:  5'- cGCGUGcGgaggcucugucccuGCGGgGCGaggaCGGCUCCGUg -3'
miRNA:   3'- -CGCAC-U--------------UGCCgCGCaa--GUCGAGGCAg -5'
24616 3' -55.6 NC_005264.1 + 154808 0.66 0.934033
Target:  5'- gGCG-GAG-GGCGCGgu-GGCgCCGUCg -3'
miRNA:   3'- -CGCaCUUgCCGCGCaagUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 35782 0.66 0.934033
Target:  5'- gGCG-GAG-GGCGCGgu-GGCgCCGUCg -3'
miRNA:   3'- -CGCaCUUgCCGCGCaagUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 46851 0.66 0.928962
Target:  5'- gGCGacgcacACGGCcugGCGUUCAGCguccCUGUCg -3'
miRNA:   3'- -CGCacu---UGCCG---CGCAAGUCGa---GGCAG- -5'
24616 3' -55.6 NC_005264.1 + 157224 0.66 0.923655
Target:  5'- aGCGUcGcGCGGCcCGauagCGGCUCCGgUCg -3'
miRNA:   3'- -CGCA-CuUGCCGcGCaa--GUCGAGGC-AG- -5'
24616 3' -55.6 NC_005264.1 + 142038 0.66 0.923655
Target:  5'- gGCGUGcAUGGCGUGcaCGGUUCCc-- -3'
miRNA:   3'- -CGCACuUGCCGCGCaaGUCGAGGcag -5'
24616 3' -55.6 NC_005264.1 + 38197 0.66 0.923655
Target:  5'- aGCGUcGcGCGGCcCGauagCGGCUCCGgUCg -3'
miRNA:   3'- -CGCA-CuUGCCGcGCaa--GUCGAGGC-AG- -5'
24616 3' -55.6 NC_005264.1 + 40312 0.66 0.918112
Target:  5'- cGCGUaGACGGCGaGcgCAGCagUGUCg -3'
miRNA:   3'- -CGCAcUUGCCGCgCaaGUCGagGCAG- -5'
24616 3' -55.6 NC_005264.1 + 156187 0.66 0.918112
Target:  5'- gGCGUG-GCGGCGC---CGGCUauaUGUCg -3'
miRNA:   3'- -CGCACuUGCCGCGcaaGUCGAg--GCAG- -5'
24616 3' -55.6 NC_005264.1 + 152830 0.67 0.912335
Target:  5'- ---cGAACGGCGCGggCuacggGGCU-CGUCg -3'
miRNA:   3'- cgcaCUUGCCGCGCaaG-----UCGAgGCAG- -5'
24616 3' -55.6 NC_005264.1 + 33804 0.67 0.912335
Target:  5'- ---cGAACGGCGCGggCuacggGGCU-CGUCg -3'
miRNA:   3'- cgcaCUUGCCGCGCaaG-----UCGAgGCAG- -5'
24616 3' -55.6 NC_005264.1 + 67164 0.67 0.912335
Target:  5'- aGCGUucucauucaaGAACGGCGCGagaAGCUCaauuguguucgCGUCc -3'
miRNA:   3'- -CGCA----------CUUGCCGCGCaagUCGAG-----------GCAG- -5'
24616 3' -55.6 NC_005264.1 + 39664 0.67 0.90571
Target:  5'- gGCGUGGGCGGCaagcaucGCGacaAGCggCCGUg -3'
miRNA:   3'- -CGCACUUGCCG-------CGCaagUCGa-GGCAg -5'
24616 3' -55.6 NC_005264.1 + 158690 0.67 0.90571
Target:  5'- gGCGUGGGCGGCaagcaucGCGacaAGCggCCGUg -3'
miRNA:   3'- -CGCACUUGCCG-------CGCaagUCGa-GGCAg -5'
24616 3' -55.6 NC_005264.1 + 103714 0.67 0.900081
Target:  5'- -aGUGGagcgGCGGCGCGgcaUCAGCggcggcggCCGcCa -3'
miRNA:   3'- cgCACU----UGCCGCGCa--AGUCGa-------GGCaG- -5'
24616 3' -55.6 NC_005264.1 + 59019 0.67 0.900081
Target:  5'- cGCG-GAGgcaGGCGCG-UCAGgUCgGUCu -3'
miRNA:   3'- -CGCaCUUg--CCGCGCaAGUCgAGgCAG- -5'
24616 3' -55.6 NC_005264.1 + 36706 0.67 0.891624
Target:  5'- gGCGcuAACGGCGCGUuggaaaccgaaaccUCAGUUCCc-- -3'
miRNA:   3'- -CGCacUUGCCGCGCA--------------AGUCGAGGcag -5'
24616 3' -55.6 NC_005264.1 + 155732 0.67 0.891624
Target:  5'- gGCGcuAACGGCGCGUuggaaaccgaaaccUCAGUUCCc-- -3'
miRNA:   3'- -CGCacUUGCCGCGCA--------------AGUCGAGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.