miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 3' -61.1 NC_005264.1 + 96118 0.66 0.680041
Target:  5'- ---gGCGCCgGCGCUUGuuGCUccccGGCGAc -3'
miRNA:   3'- caagCGCGG-CGCGGACggCGA----CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 29938 0.66 0.680041
Target:  5'- --aCGCGCUGCGCCUaGCCGgU--CAAc -3'
miRNA:   3'- caaGCGCGGCGCGGA-CGGCgAcuGUU- -5'
24629 3' -61.1 NC_005264.1 + 117674 0.66 0.6601
Target:  5'- cGUUCGCuGCCGCGCucucCUGCCuccGCgucgUGGCGc -3'
miRNA:   3'- -CAAGCG-CGGCGCG----GACGG---CG----ACUGUu -5'
24629 3' -61.1 NC_005264.1 + 145570 0.66 0.6601
Target:  5'- --cCGCcCCGuCGCCU-CCGUUGACGAc -3'
miRNA:   3'- caaGCGcGGC-GCGGAcGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 58897 0.66 0.6601
Target:  5'- cGUUCGCGCauaGCGgaUGCCGCcuccucgaUGGCGu -3'
miRNA:   3'- -CAAGCGCGg--CGCggACGGCG--------ACUGUu -5'
24629 3' -61.1 NC_005264.1 + 78528 0.66 0.6601
Target:  5'- -aUCGCGCCGUGCCcGgUGCacGACu- -3'
miRNA:   3'- caAGCGCGGCGCGGaCgGCGa-CUGuu -5'
24629 3' -61.1 NC_005264.1 + 17680 0.66 0.650094
Target:  5'- -gUCaCGCCGgcuCGUCaGCCGCUGGCGGa -3'
miRNA:   3'- caAGcGCGGC---GCGGaCGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 149224 0.66 0.650094
Target:  5'- --gUGCGCCaGCGgucaCUGUCGCUGGCc- -3'
miRNA:   3'- caaGCGCGG-CGCg---GACGGCGACUGuu -5'
24629 3' -61.1 NC_005264.1 + 11969 0.66 0.650094
Target:  5'- -gUCGCGCCaUGuCUUGCCGCgcgcGGCAc -3'
miRNA:   3'- caAGCGCGGcGC-GGACGGCGa---CUGUu -5'
24629 3' -61.1 NC_005264.1 + 116125 0.66 0.640073
Target:  5'- ---aGCGCUGCGCCUcuGCCGCa----- -3'
miRNA:   3'- caagCGCGGCGCGGA--CGGCGacuguu -5'
24629 3' -61.1 NC_005264.1 + 33251 0.66 0.640073
Target:  5'- --cCGCGCCgcaGCGCCUGCagaGCgcGCAAg -3'
miRNA:   3'- caaGCGCGG---CGCGGACGg--CGacUGUU- -5'
24629 3' -61.1 NC_005264.1 + 13889 0.67 0.620022
Target:  5'- --aCGCGUCGuCGCCUGCagGC-GACGGg -3'
miRNA:   3'- caaGCGCGGC-GCGGACGg-CGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 11427 0.67 0.600006
Target:  5'- -gUCGCGgCGgaCGCCgGCCGCcGGCAu -3'
miRNA:   3'- caAGCGCgGC--GCGGaCGGCGaCUGUu -5'
24629 3' -61.1 NC_005264.1 + 130454 0.67 0.600006
Target:  5'- -gUCGCGgCGgaCGCCgGCCGCcGGCAu -3'
miRNA:   3'- caAGCGCgGC--GCGGaCGGCGaCUGUu -5'
24629 3' -61.1 NC_005264.1 + 103377 0.67 0.599007
Target:  5'- -gUCGUcaugccuGCCGCGCgggGCCGCUuuGACAAa -3'
miRNA:   3'- caAGCG-------CGGCGCGga-CGGCGA--CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 106254 0.67 0.590029
Target:  5'- ---gGCGCuCGCGCCUGCUGaC-GGCGGa -3'
miRNA:   3'- caagCGCG-GCGCGGACGGC-GaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 102000 0.67 0.590029
Target:  5'- --aCGCGCCGaCGCCgacGCCaaGCUGAa-- -3'
miRNA:   3'- caaGCGCGGC-GCGGa--CGG--CGACUguu -5'
24629 3' -61.1 NC_005264.1 + 128721 0.67 0.590029
Target:  5'- -cUCGCGCCucgaCGCUguuucgGCCGCUGAg-- -3'
miRNA:   3'- caAGCGCGGc---GCGGa-----CGGCGACUguu -5'
24629 3' -61.1 NC_005264.1 + 142882 0.67 0.589033
Target:  5'- -cUCGCGCCGCGCCUuucuccaGUCacgGC-GACGAu -3'
miRNA:   3'- caAGCGCGGCGCGGA-------CGG---CGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 116390 0.67 0.580081
Target:  5'- ---aGCGCCGCGCaaaaGCCGCaGGCc- -3'
miRNA:   3'- caagCGCGGCGCGga--CGGCGaCUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.