miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 5' -56.3 NC_005264.1 + 86098 0.66 0.926371
Target:  5'- -uUCCCCaaGACGGcgaagaugcgccgcGCACCAUGAGc- -3'
miRNA:   3'- guAGGGGcgCUGUC--------------UGUGGUACUCcc -5'
24629 5' -56.3 NC_005264.1 + 151857 0.66 0.922629
Target:  5'- --cUCCgGCGGC-GACA-CGUGGGGGg -3'
miRNA:   3'- guaGGGgCGCUGuCUGUgGUACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 75725 0.66 0.922629
Target:  5'- --gCCCCGCGGgcgcCGGAgGCCAgucuGGGu -3'
miRNA:   3'- guaGGGGCGCU----GUCUgUGGUacu-CCC- -5'
24629 5' -56.3 NC_005264.1 + 62295 0.66 0.922085
Target:  5'- aCAUgCCCGCGAgcgucguccggacUAGACccGCCcugucgucuAUGAGGGc -3'
miRNA:   3'- -GUAgGGGCGCU-------------GUCUG--UGG---------UACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 149788 0.66 0.917086
Target:  5'- cUAUCCCCGCcaaacgacaGCAGACgagcgGCCGU-AGGGu -3'
miRNA:   3'- -GUAGGGGCGc--------UGUCUG-----UGGUAcUCCC- -5'
24629 5' -56.3 NC_005264.1 + 86641 0.66 0.917086
Target:  5'- -cUCuUCUGCGuuGGGCGCCGcGGGGGa -3'
miRNA:   3'- guAG-GGGCGCugUCUGUGGUaCUCCC- -5'
24629 5' -56.3 NC_005264.1 + 102873 0.66 0.917086
Target:  5'- --aCCgCCGCGuggcugagcggcGCGGACACCAUGAu-- -3'
miRNA:   3'- guaGG-GGCGC------------UGUCUGUGGUACUccc -5'
24629 5' -56.3 NC_005264.1 + 160640 0.66 0.917086
Target:  5'- --aCCCuuagCGCGcAUGGGCGCCGgcaaugGAGGGg -3'
miRNA:   3'- guaGGG----GCGC-UGUCUGUGGUa-----CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 75094 0.66 0.899077
Target:  5'- --gCgCUGCGGCAGGCGCCGgcgccgagcUGGGGc -3'
miRNA:   3'- guaGgGGCGCUGUCUGUGGU---------ACUCCc -5'
24629 5' -56.3 NC_005264.1 + 127913 0.66 0.899077
Target:  5'- aCAUCUCCugaGGCGGGCGCCAcu-GGGc -3'
miRNA:   3'- -GUAGGGGcg-CUGUCUGUGGUacuCCC- -5'
24629 5' -56.3 NC_005264.1 + 80227 0.66 0.898441
Target:  5'- aUAUCCCCucccaacgaagucGCGAUugucACGCCuUGAGGGc -3'
miRNA:   3'- -GUAGGGG-------------CGCUGuc--UGUGGuACUCCC- -5'
24629 5' -56.3 NC_005264.1 + 21285 0.67 0.892621
Target:  5'- cCAUCUCCaGCGGgGGACgcggACCAUGGcGGa -3'
miRNA:   3'- -GUAGGGG-CGCUgUCUG----UGGUACUcCC- -5'
24629 5' -56.3 NC_005264.1 + 149564 0.67 0.892621
Target:  5'- -cUCuCCCGCgGACAGcC-CCGggcgGAGGGg -3'
miRNA:   3'- guAG-GGGCG-CUGUCuGuGGUa---CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 89952 0.67 0.879048
Target:  5'- aAUCCCUGaaGCAGGCaaGCCGUGuGGa -3'
miRNA:   3'- gUAGGGGCgcUGUCUG--UGGUACuCCc -5'
24629 5' -56.3 NC_005264.1 + 15694 0.67 0.879048
Target:  5'- -cUCCUCGC-ACAGaACGCCGUcGAGuGGa -3'
miRNA:   3'- guAGGGGCGcUGUC-UGUGGUA-CUC-CC- -5'
24629 5' -56.3 NC_005264.1 + 40637 0.67 0.871939
Target:  5'- -uUCCCCGCGcCGucgcGACGCg--GAGGGu -3'
miRNA:   3'- guAGGGGCGCuGU----CUGUGguaCUCCC- -5'
24629 5' -56.3 NC_005264.1 + 7756 0.67 0.871939
Target:  5'- -cUCUCCGCGucggcaguCGGGCACUgagcGAGGGg -3'
miRNA:   3'- guAGGGGCGCu-------GUCUGUGGua--CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 126782 0.67 0.871939
Target:  5'- -cUCUCCGCGucggcaguCGGGCACUgagcGAGGGg -3'
miRNA:   3'- guAGGGGCGCu-------GUCUGUGGua--CUCCC- -5'
24629 5' -56.3 NC_005264.1 + 6998 0.67 0.871217
Target:  5'- uGUCCCUGCGGgcGGCGCCAacgugaaaguuauUGGGGu -3'
miRNA:   3'- gUAGGGGCGCUguCUGUGGU-------------ACUCCc -5'
24629 5' -56.3 NC_005264.1 + 103051 0.68 0.849383
Target:  5'- --gCUCCGCGGCGGACacgGCCGUGGa-- -3'
miRNA:   3'- guaGGGGCGCUGUCUG---UGGUACUccc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.