miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 3' -58.2 NC_005264.1 + 45233 0.66 0.824313
Target:  5'- aGCGCAGC---GUAGGCAUGGccGCUGa -3'
miRNA:   3'- gCGCGUCGgugCAUCUGUACCc-CGAU- -5'
24644 3' -58.2 NC_005264.1 + 74242 0.66 0.819215
Target:  5'- gCGCGCuGGCCGCGcuccagacacggcggUAGAgGcGGGGCc- -3'
miRNA:   3'- -GCGCG-UCGGUGC---------------AUCUgUaCCCCGau -5'
24644 3' -58.2 NC_005264.1 + 75410 0.66 0.815783
Target:  5'- uGCGCGGCCGCG--GGCAguguacgGcGGGCc- -3'
miRNA:   3'- gCGCGUCGGUGCauCUGUa------C-CCCGau -5'
24644 3' -58.2 NC_005264.1 + 127092 0.66 0.815783
Target:  5'- aCGuCGCGGCCGCaGUcGGGCAcgGGcGGCg- -3'
miRNA:   3'- -GC-GCGUCGGUG-CA-UCUGUa-CC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 8065 0.66 0.815783
Target:  5'- aCGuCGCGGCCGCaGUcGGGCAcgGGcGGCg- -3'
miRNA:   3'- -GC-GCGUCGGUG-CA-UCUGUa-CC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 23943 0.66 0.815783
Target:  5'- uCGCGCcGCCGaugGGuAUGUGGGGCg- -3'
miRNA:   3'- -GCGCGuCGGUgcaUC-UGUACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 87368 0.66 0.807088
Target:  5'- aCGCGCgacuGGCCACcccAGGCGgacuuUGGGGCc- -3'
miRNA:   3'- -GCGCG----UCGGUGca-UCUGU-----ACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 55259 0.66 0.807088
Target:  5'- uGCGaCcGCCACGaAGAgcUGGGGCg- -3'
miRNA:   3'- gCGC-GuCGGUGCaUCUguACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 52591 0.66 0.798236
Target:  5'- aCGCGC-GCUACGUGGAUu---GGCUGa -3'
miRNA:   3'- -GCGCGuCGGUGCAUCUGuaccCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 35160 0.66 0.789237
Target:  5'- cCGCGguGUguCugGUGGGCAagguucGGGGCg- -3'
miRNA:   3'- -GCGCguCG--GugCAUCUGUa-----CCCCGau -5'
24644 3' -58.2 NC_005264.1 + 86160 0.66 0.789237
Target:  5'- gGCGaCAGCCugGUGGcCGUGGaaGCa- -3'
miRNA:   3'- gCGC-GUCGGugCAUCuGUACCc-CGau -5'
24644 3' -58.2 NC_005264.1 + 93345 0.66 0.788329
Target:  5'- gGCGUGGCaCGCGUGuauggauaugugcGGCGaaUGGGGCg- -3'
miRNA:   3'- gCGCGUCG-GUGCAU-------------CUGU--ACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 10070 0.67 0.780097
Target:  5'- -cUGCAGCCGCGgcGgaaucucccGCcgGGGGCa- -3'
miRNA:   3'- gcGCGUCGGUGCauC---------UGuaCCCCGau -5'
24644 3' -58.2 NC_005264.1 + 44875 0.67 0.777329
Target:  5'- -cUGCAGCCugGggAGGCGggcccgucgucgucUGGGGCg- -3'
miRNA:   3'- gcGCGUCGGugCa-UCUGU--------------ACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 126960 0.67 0.770827
Target:  5'- -aCGCuGCCGCG-AGACGagccggaGGGGCUAc -3'
miRNA:   3'- gcGCGuCGGUGCaUCUGUa------CCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 7934 0.67 0.770827
Target:  5'- -aCGCuGCCGCG-AGACGagccggaGGGGCUAc -3'
miRNA:   3'- gcGCGuCGGUGCaUCUGUa------CCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 51660 0.67 0.761434
Target:  5'- aGCGCuGCCacucGCGUAGACccGGuGGUa- -3'
miRNA:   3'- gCGCGuCGG----UGCAUCUGuaCC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 116437 0.67 0.732614
Target:  5'- gGCGUcuGGCCGCGgGGGCGacgaucGGGGCg- -3'
miRNA:   3'- gCGCG--UCGGUGCaUCUGUa-----CCCCGau -5'
24644 3' -58.2 NC_005264.1 + 14890 0.67 0.732614
Target:  5'- aCGCGCGuCCAUGcuuaUGGACGUGGaGCUGc -3'
miRNA:   3'- -GCGCGUcGGUGC----AUCUGUACCcCGAU- -5'
24644 3' -58.2 NC_005264.1 + 100072 0.68 0.722824
Target:  5'- uGCGgGGCCuaggGCGUAG-CAUGGcGGCc- -3'
miRNA:   3'- gCGCgUCGG----UGCAUCuGUACC-CCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.