miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 5' -60.7 NC_005264.1 + 51785 0.66 0.696977
Target:  5'- cGGCGGCacuUCGUcCGGCGAGUCc- -3'
miRNA:   3'- aCCGUCGaacAGCGcGCCGCUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 54396 0.66 0.696977
Target:  5'- cGGauaauaaagaAGUcgUUGUUGCGCGGCGcGCCg- -3'
miRNA:   3'- aCCg---------UCG--AACAGCGCGCCGCuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 80768 0.66 0.695986
Target:  5'- cGGCGGCgaagaucUUGUcCGCGCucuagaggaGGCGcGCCUg -3'
miRNA:   3'- aCCGUCG-------AACA-GCGCG---------CCGCuCGGAa -5'
24673 5' -60.7 NC_005264.1 + 6302 0.66 0.687043
Target:  5'- --cCAGCUgcacUUGCGCGGCGAGgCUUc -3'
miRNA:   3'- accGUCGAac--AGCGCGCCGCUCgGAA- -5'
24673 5' -60.7 NC_005264.1 + 139126 0.66 0.687043
Target:  5'- cGGCAGCagaUUGuUCGUGUGGCccgcguGCCUc -3'
miRNA:   3'- aCCGUCG---AAC-AGCGCGCCGcu----CGGAa -5'
24673 5' -60.7 NC_005264.1 + 121545 0.66 0.687043
Target:  5'- gGGCcgauAGCguggaaGUCGaCGCgGGCGGGCCg- -3'
miRNA:   3'- aCCG----UCGaa----CAGC-GCG-CCGCUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 68449 0.66 0.687043
Target:  5'- -cGCGGUcUG-CGCGCGGaGGGCCUc -3'
miRNA:   3'- acCGUCGaACaGCGCGCCgCUCGGAa -5'
24673 5' -60.7 NC_005264.1 + 148479 0.66 0.686047
Target:  5'- cGGCGGCUagacUaugggacgcgcugGUCGCguugGCGGCGAGCg-- -3'
miRNA:   3'- aCCGUCGA----A-------------CAGCG----CGCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 89926 0.66 0.683056
Target:  5'- cGGCAGCaacgUGUCGCucauuccgcccauCGGCG-GCCg- -3'
miRNA:   3'- aCCGUCGa---ACAGCGc------------GCCGCuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 82430 0.66 0.66705
Target:  5'- gGGCAGCagcUGUCGuCGCGGUagaagucccaGAGCa-- -3'
miRNA:   3'- aCCGUCGa--ACAGC-GCGCCG----------CUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 124087 0.66 0.657009
Target:  5'- cUGGCAGgg-GUCGCaagGCGGCcAGCCc- -3'
miRNA:   3'- -ACCGUCgaaCAGCG---CGCCGcUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 5060 0.66 0.657009
Target:  5'- cUGGCAGgg-GUCGCaagGCGGCcAGCCc- -3'
miRNA:   3'- -ACCGUCgaaCAGCG---CGCCGcUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 82178 0.66 0.646948
Target:  5'- cGuGCGGCcgGUCG-GCGGCG-GCCa- -3'
miRNA:   3'- aC-CGUCGaaCAGCgCGCCGCuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 31512 0.67 0.636876
Target:  5'- aGGCGGCUccagGcUCGgGCGGggaGGGCCg- -3'
miRNA:   3'- aCCGUCGAa---C-AGCgCGCCg--CUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 107208 0.67 0.636876
Target:  5'- aGGCGGCggcgCGCGCGGUuGGCa-- -3'
miRNA:   3'- aCCGUCGaacaGCGCGCCGcUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 150539 0.67 0.636876
Target:  5'- aGGCGGCUccagGcUCGgGCGGggaGGGCCg- -3'
miRNA:   3'- aCCGUCGAa---C-AGCgCGCCg--CUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 53550 0.67 0.6268
Target:  5'- aGGCGGUgacgaaagucgUUGUCGCGCagagcGGCGcGGCUUg -3'
miRNA:   3'- aCCGUCG-----------AACAGCGCG-----CCGC-UCGGAa -5'
24673 5' -60.7 NC_005264.1 + 149422 0.67 0.606667
Target:  5'- cGGCGGCggcgGUCGCGCgccGGUgcggaGAGCUg- -3'
miRNA:   3'- aCCGUCGaa--CAGCGCG---CCG-----CUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 30395 0.67 0.606667
Target:  5'- cGGCGGCggcgGUCGCGCgccGGUgcggaGAGCUg- -3'
miRNA:   3'- aCCGUCGaa--CAGCGCG---CCG-----CUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 56242 0.67 0.596625
Target:  5'- cGcGCGGCUuuUGUCGagGUGGCGGGCa-- -3'
miRNA:   3'- aC-CGUCGA--ACAGCg-CGCCGCUCGgaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.