miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 78414 0.66 0.956367
Target:  5'- --uUCGUGUACGUcccaaauggcauguuGUcugUGCGCACGUUa -3'
miRNA:   3'- cuuAGCGCGUGCG---------------CA---ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 66320 0.66 0.95483
Target:  5'- -uGUUGCGCG-GCGUcGUGCAUGUUu -3'
miRNA:   3'- cuUAGCGCGUgCGCAaCGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 75683 0.66 0.95483
Target:  5'- gGAGUCGCGCGCa----GCGC-CGUCu -3'
miRNA:   3'- -CUUAGCGCGUGcgcaaCGCGuGCAGc -5'
24676 5' -54.9 NC_005264.1 + 39107 0.66 0.95483
Target:  5'- ---cCGUGCACGCcuacguGUUGCuGCGCuUCGg -3'
miRNA:   3'- cuuaGCGCGUGCG------CAACG-CGUGcAGC- -5'
24676 5' -54.9 NC_005264.1 + 24495 0.66 0.95483
Target:  5'- uAGUCGCGUucggGCGCcuuGUcGCGCACG-CGc -3'
miRNA:   3'- cUUAGCGCG----UGCG---CAaCGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 152522 0.66 0.95083
Target:  5'- ---cCGCGCuuGCucaGUGCGCGUCGc -3'
miRNA:   3'- cuuaGCGCGugCGcaaCGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 144982 0.66 0.95083
Target:  5'- cGAUUGCuCACGCGgucgaacaGCGCGCG-CGa -3'
miRNA:   3'- cUUAGCGcGUGCGCaa------CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 19761 0.66 0.95083
Target:  5'- -cAUCGCGC-CGCGaUUGUGaCACG-Ca -3'
miRNA:   3'- cuUAGCGCGuGCGC-AACGC-GUGCaGc -5'
24676 5' -54.9 NC_005264.1 + 86503 0.66 0.95083
Target:  5'- cAGUCGC-CGCGCGgccaacuuuCGUGCGUCGa -3'
miRNA:   3'- cUUAGCGcGUGCGCaac------GCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 111246 0.66 0.95083
Target:  5'- -cGUCGC-UGCGCGUaUGCGCGggaaacucgauCGUCGg -3'
miRNA:   3'- cuUAGCGcGUGCGCA-ACGCGU-----------GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 33495 0.66 0.95083
Target:  5'- ---cCGCGCuuGCucaGUGCGCGUCGc -3'
miRNA:   3'- cuuaGCGCGugCGcaaCGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 100919 0.66 0.946599
Target:  5'- --uUCGCGCAaGCGgcgGCGCcCGUgCGc -3'
miRNA:   3'- cuuAGCGCGUgCGCaa-CGCGuGCA-GC- -5'
24676 5' -54.9 NC_005264.1 + 93488 0.66 0.942136
Target:  5'- uGAggCGCuGCugGCGgccgGCGCGUCGu -3'
miRNA:   3'- -CUuaGCG-CGugCGCaacgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 154227 0.66 0.942136
Target:  5'- ----aGCGCcuaccgguGCGCGUUGCggaggaacacGCGCGUCu -3'
miRNA:   3'- cuuagCGCG--------UGCGCAACG----------CGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 157395 0.66 0.942136
Target:  5'- ---cUGCGCAUGCuGUacgGCGCgGCGUUGg -3'
miRNA:   3'- cuuaGCGCGUGCG-CAa--CGCG-UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 85052 0.66 0.942136
Target:  5'- -cGUCuGCGC-CGCGgUGCGUcucugcggccGCGUCGu -3'
miRNA:   3'- cuUAG-CGCGuGCGCaACGCG----------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 121172 0.66 0.942136
Target:  5'- cGGUC-CGCAC-UGaUGCGCACGUCc -3'
miRNA:   3'- cUUAGcGCGUGcGCaACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 61537 0.66 0.942136
Target:  5'- -uAUCGCGCugGgcauaGcUG-GCACGUCGg -3'
miRNA:   3'- cuUAGCGCGugCg----CaACgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 126304 0.66 0.941215
Target:  5'- --uUCGgGCGCGCGgccgauggcuccUGCGCccgccuCGUCGa -3'
miRNA:   3'- cuuAGCgCGUGCGCa-----------ACGCGu-----GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 1121 0.66 0.937438
Target:  5'- -uAUgGCGCGgGuCGUUGUGCAUG-CGg -3'
miRNA:   3'- cuUAgCGCGUgC-GCAACGCGUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.