miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 3' -57.4 NC_005264.1 + 53200 0.66 0.895945
Target:  5'- gGUGGGGGACGuGGCCGaGGUaguggacgCGUa -3'
miRNA:   3'- aCGCCUCUUGCuCUGGCgCCAga------GCA- -5'
24687 3' -57.4 NC_005264.1 + 13587 0.66 0.895303
Target:  5'- gGCGGAacGAagACGGGACCggcgaucGCGGUCgggacgCGg -3'
miRNA:   3'- aCGCCU--CU--UGCUCUGG-------CGCCAGa-----GCa -5'
24687 3' -57.4 NC_005264.1 + 132614 0.66 0.895303
Target:  5'- gGCGGAacGAagACGGGACCggcgaucGCGGUCgggacgCGg -3'
miRNA:   3'- aCGCCU--CU--UGCUCUGG-------CGCCAGa-----GCa -5'
24687 3' -57.4 NC_005264.1 + 105615 0.66 0.889422
Target:  5'- gUGCGuGGGAAauUGAGGCCGUcggGGUC-CGa -3'
miRNA:   3'- -ACGC-CUCUU--GCUCUGGCG---CCAGaGCa -5'
24687 3' -57.4 NC_005264.1 + 116430 0.66 0.889422
Target:  5'- cGCuGGGGGCGucuGGCCGCGGgggCGa -3'
miRNA:   3'- aCGcCUCUUGCu--CUGGCGCCagaGCa -5'
24687 3' -57.4 NC_005264.1 + 155100 0.66 0.887423
Target:  5'- cGCGGAGAgcccguuuccgaggACGGGAUgGCGGaCagGUg -3'
miRNA:   3'- aCGCCUCU--------------UGCUCUGgCGCCaGagCA- -5'
24687 3' -57.4 NC_005264.1 + 36073 0.66 0.887423
Target:  5'- cGCGGAGAgcccguuuccgaggACGGGAUgGCGGaCagGUg -3'
miRNA:   3'- aCGCCUCU--------------UGCUCUGgCGCCaGagCA- -5'
24687 3' -57.4 NC_005264.1 + 125499 0.66 0.882682
Target:  5'- cGCGGcGAACGucggGGugCGCGGcCaUCGa -3'
miRNA:   3'- aCGCCuCUUGC----UCugGCGCCaG-AGCa -5'
24687 3' -57.4 NC_005264.1 + 6472 0.66 0.882682
Target:  5'- cGCGGcGAACGucggGGugCGCGGcCaUCGa -3'
miRNA:   3'- aCGCCuCUUGC----UCugGCGCCaG-AGCa -5'
24687 3' -57.4 NC_005264.1 + 45161 0.66 0.882682
Target:  5'- cGCGGAGGcAgGAGAgCGCGGcagCGa -3'
miRNA:   3'- aCGCCUCU-UgCUCUgGCGCCagaGCa -5'
24687 3' -57.4 NC_005264.1 + 87148 0.66 0.875022
Target:  5'- cGCGGuacuGAAC-AGcaugcgcGCCGCGGUUUCGc -3'
miRNA:   3'- aCGCCu---CUUGcUC-------UGGCGCCAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 133194 0.66 0.868567
Target:  5'- cGCGGcGGACc-GACUGCGGgcCUCGUu -3'
miRNA:   3'- aCGCCuCUUGcuCUGGCGCCa-GAGCA- -5'
24687 3' -57.4 NC_005264.1 + 133313 0.66 0.868567
Target:  5'- cUGCGaGAGAcggugGCGAGAUgGCgGGUCUUu- -3'
miRNA:   3'- -ACGC-CUCU-----UGCUCUGgCG-CCAGAGca -5'
24687 3' -57.4 NC_005264.1 + 80501 0.66 0.868567
Target:  5'- gGCcGAGAGCGAGaacaucGCCGCGGUgCgcaaCGUc -3'
miRNA:   3'- aCGcCUCUUGCUC------UGGCGCCA-Ga---GCA- -5'
24687 3' -57.4 NC_005264.1 + 101341 0.66 0.868567
Target:  5'- cGCGGcgcuagcCGAGACCGCGGggcgCGUc -3'
miRNA:   3'- aCGCCucuu---GCUCUGGCGCCaga-GCA- -5'
24687 3' -57.4 NC_005264.1 + 45547 0.66 0.868567
Target:  5'- cGCGGAGAGCGGcAUCGCGcaCgCGUa -3'
miRNA:   3'- aCGCCUCUUGCUcUGGCGCcaGaGCA- -5'
24687 3' -57.4 NC_005264.1 + 36660 0.66 0.868567
Target:  5'- cGCGGAuGGACcuGGCCGCGaccacGUUUCGUc -3'
miRNA:   3'- aCGCCU-CUUGcuCUGGCGC-----CAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 63645 0.66 0.858953
Target:  5'- cGCGGAGGccuGCGAGgaccccacgucuacGCCGCGaGUgaCGUc -3'
miRNA:   3'- aCGCCUCU---UGCUC--------------UGGCGC-CAgaGCA- -5'
24687 3' -57.4 NC_005264.1 + 116556 0.67 0.853638
Target:  5'- cGcCGGAuGAGCGAG-CUGCGGcgCUCa- -3'
miRNA:   3'- aC-GCCU-CUUGCUCuGGCGCCa-GAGca -5'
24687 3' -57.4 NC_005264.1 + 103289 0.67 0.852871
Target:  5'- gGCGGuacugucccgggcAGucaGAGACCGCGuaggaGUCUCGUg -3'
miRNA:   3'- aCGCC-------------UCuugCUCUGGCGC-----CAGAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.