miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 5' -58.5 NC_005264.1 + 132312 0.66 0.840712
Target:  5'- --cCGCGgucggccaaacUGCGCGAgaGCCGCUUcCCGc -3'
miRNA:   3'- cauGCGC-----------ACGCGCUa-CGGCGAGaGGC- -5'
24687 5' -58.5 NC_005264.1 + 77268 0.66 0.840712
Target:  5'- -cACGUgGUGCaCGGUGCCGCgCUCg- -3'
miRNA:   3'- caUGCG-CACGcGCUACGGCGaGAGgc -5'
24687 5' -58.5 NC_005264.1 + 3695 0.66 0.840712
Target:  5'- -gGCGCGgaaaggGCGCacaguacuUGCCGCgggcgggcuUCUCCGa -3'
miRNA:   3'- caUGCGCa-----CGCGcu------ACGGCG---------AGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 108604 0.66 0.840712
Target:  5'- cGUugGC--GCGCGggGCCGC-CUCg- -3'
miRNA:   3'- -CAugCGcaCGCGCuaCGGCGaGAGgc -5'
24687 5' -58.5 NC_005264.1 + 60858 0.66 0.840712
Target:  5'- -gGCGCGUGCGCG--GCaaaGUUUUCUa -3'
miRNA:   3'- caUGCGCACGCGCuaCGg--CGAGAGGc -5'
24687 5' -58.5 NC_005264.1 + 146639 0.66 0.832664
Target:  5'- --cCGCGUGuCGUGAuagacauacacaUGCCGCgaccgacCUCCGc -3'
miRNA:   3'- cauGCGCAC-GCGCU------------ACGGCGa------GAGGC- -5'
24687 5' -58.5 NC_005264.1 + 150690 0.66 0.832664
Target:  5'- -gACGCGaacGCGCGAgGCaggGCUCUCgGc -3'
miRNA:   3'- caUGCGCa--CGCGCUaCGg--CGAGAGgC- -5'
24687 5' -58.5 NC_005264.1 + 80646 0.66 0.832664
Target:  5'- -cGCGCG-GCcaCGAcacgGCCGCUCUUCa -3'
miRNA:   3'- caUGCGCaCGc-GCUa---CGGCGAGAGGc -5'
24687 5' -58.5 NC_005264.1 + 25836 0.66 0.824441
Target:  5'- uGUACGCGUuuugcauaacGCGCcaaaacGCCGC-CUCCa -3'
miRNA:   3'- -CAUGCGCA----------CGCGcua---CGGCGaGAGGc -5'
24687 5' -58.5 NC_005264.1 + 41672 0.66 0.824441
Target:  5'- cGUGCGCaucaGUGCGgaccguacguauUGAUGCUGCUCguagCCc -3'
miRNA:   3'- -CAUGCG----CACGC------------GCUACGGCGAGa---GGc -5'
24687 5' -58.5 NC_005264.1 + 4498 0.66 0.816051
Target:  5'- -gGCGCG-GUGCG--GCCGCUUguguUCCGc -3'
miRNA:   3'- caUGCGCaCGCGCuaCGGCGAG----AGGC- -5'
24687 5' -58.5 NC_005264.1 + 26360 0.66 0.816051
Target:  5'- uGUGCGCcgcggcaggcUGCGCGgcGCCG-UCUCUGa -3'
miRNA:   3'- -CAUGCGc---------ACGCGCuaCGGCgAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 56139 0.66 0.816051
Target:  5'- -cGCGCGagUGuCGCGuugGCCGCUuuuucgcaCUCCGc -3'
miRNA:   3'- caUGCGC--AC-GCGCua-CGGCGA--------GAGGC- -5'
24687 5' -58.5 NC_005264.1 + 34259 0.66 0.807502
Target:  5'- cGUGCGCGcgguaaucCGCG-UGCUGCgCUCCGc -3'
miRNA:   3'- -CAUGCGCac------GCGCuACGGCGaGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 65813 0.66 0.807502
Target:  5'- uUGCGCG-GCGauuuuUGCCGCcUCUUCGu -3'
miRNA:   3'- cAUGCGCaCGCgcu--ACGGCG-AGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 95961 0.66 0.807502
Target:  5'- aUAUG-GUGuCGCG--GCUGCUCUCCGc -3'
miRNA:   3'- cAUGCgCAC-GCGCuaCGGCGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 137611 0.67 0.7988
Target:  5'- uUACuGCuguucuUGCGCG-UGUCGCUCUCCc -3'
miRNA:   3'- cAUG-CGc-----ACGCGCuACGGCGAGAGGc -5'
24687 5' -58.5 NC_005264.1 + 126848 0.67 0.7988
Target:  5'- cGU-CGC-UGCGCGuu-UCGCUCUCCGc -3'
miRNA:   3'- -CAuGCGcACGCGCuacGGCGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 79127 0.67 0.789955
Target:  5'- -gGCgGCGUGCGCu-UGCCcCuUCUCCGu -3'
miRNA:   3'- caUG-CGCACGCGcuACGGcG-AGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 124444 0.67 0.789955
Target:  5'- cGUACGCG-GCaucugucucgGCGucGCCGCUCUcgCCGg -3'
miRNA:   3'- -CAUGCGCaCG----------CGCuaCGGCGAGA--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.