miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24698 3' -64.6 NC_005264.1 + 160108 0.66 0.506992
Target:  5'- aAGGCCUagugacGCgCCUGGgGGC--AGUGCu -3'
miRNA:   3'- gUCCGGA------CGgGGACCgCCGacUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 159081 0.66 0.506992
Target:  5'- aGGGCCcgcagcGCCCC-GGCGGCaaGAG-GCc -3'
miRNA:   3'- gUCCGGa-----CGGGGaCCGCCGa-CUCgCG- -5'
24698 3' -64.6 NC_005264.1 + 158825 0.68 0.386318
Target:  5'- -cGGCCcgccaaGCCCCUGGUGGgCgagGAG-GCa -3'
miRNA:   3'- guCCGGa-----CGGGGACCGCC-Ga--CUCgCG- -5'
24698 3' -64.6 NC_005264.1 + 157362 0.68 0.386318
Target:  5'- gCGGGCCcugGCCgUgaugcugGGCGGCgGGGCGg -3'
miRNA:   3'- -GUCCGGa--CGGgGa------CCGCCGaCUCGCg -5'
24698 3' -64.6 NC_005264.1 + 156420 0.68 0.378443
Target:  5'- uCAGuGCCUGCggCUGGCGGCggUGAuCGCc -3'
miRNA:   3'- -GUC-CGGACGggGACCGCCG--ACUcGCG- -5'
24698 3' -64.6 NC_005264.1 + 154569 0.66 0.534974
Target:  5'- -cGGCCUGCaaCgaGGCGGacaccaGGGCGCc -3'
miRNA:   3'- guCCGGACGg-GgaCCGCCga----CUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 153511 0.67 0.444365
Target:  5'- -cGGCC-GCCCCUGGCGGg-GA-CGa -3'
miRNA:   3'- guCCGGaCGGGGACCGCCgaCUcGCg -5'
24698 3' -64.6 NC_005264.1 + 152752 0.68 0.418879
Target:  5'- -cGGCCgcgaUGCCCCcGGCGGgaGAuucCGCc -3'
miRNA:   3'- guCCGG----ACGGGGaCCGCCgaCUc--GCG- -5'
24698 3' -64.6 NC_005264.1 + 151847 0.7 0.299132
Target:  5'- gGGGCCgccGCUCC-GGCGGCgacacgugggGGGCGUc -3'
miRNA:   3'- gUCCGGa--CGGGGaCCGCCGa---------CUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 143461 0.66 0.488687
Target:  5'- cCAGGa-UGCCCgUGG-GGCauUGGGUGCg -3'
miRNA:   3'- -GUCCggACGGGgACCgCCG--ACUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 142317 0.68 0.410583
Target:  5'- aCGGGCgCaacgcgUGCCCCUGGCuuCUcGGCGCa -3'
miRNA:   3'- -GUCCG-G------ACGGGGACCGccGAcUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 135583 0.66 0.525582
Target:  5'- aGGGCCUcUUCCUGGCuaCUagaGAGCGCa -3'
miRNA:   3'- gUCCGGAcGGGGACCGccGA---CUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 132087 0.68 0.410583
Target:  5'- -cGGCCcucguuuCCCCUGaGCGGCUcuuuGCGCg -3'
miRNA:   3'- guCCGGac-----GGGGAC-CGCCGAcu--CGCG- -5'
24698 3' -64.6 NC_005264.1 + 131710 0.66 0.506992
Target:  5'- uGGGCCUGCgC--GGCGuuGCUG-GCGCu -3'
miRNA:   3'- gUCCGGACGgGgaCCGC--CGACuCGCG- -5'
24698 3' -64.6 NC_005264.1 + 129911 0.66 0.529331
Target:  5'- gGGGCCguggggaauucccggUGCCCggucaUUGGuCGGCUGgauGGCGUg -3'
miRNA:   3'- gUCCGG---------------ACGGG-----GACC-GCCGAC---UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 128918 0.68 0.418879
Target:  5'- -cGGCCUucccagCCCUGGCGGCaGAaaggcgGCGCu -3'
miRNA:   3'- guCCGGAcg----GGGACCGCCGaCU------CGCG- -5'
24698 3' -64.6 NC_005264.1 + 123618 0.69 0.355472
Target:  5'- gCAGGCCcuCCCCgccagcgccgcGGCGGCguaGGCGCg -3'
miRNA:   3'- -GUCCGGacGGGGa----------CCGCCGac-UCGCG- -5'
24698 3' -64.6 NC_005264.1 + 123360 1.1 0.000375
Target:  5'- gCAGGCCUGCCCCUGGCGGCUGAGCGCg -3'
miRNA:   3'- -GUCCGGACGGGGACCGCCGACUCGCG- -5'
24698 3' -64.6 NC_005264.1 + 122508 0.71 0.27986
Target:  5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3'
miRNA:   3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5'
24698 3' -64.6 NC_005264.1 + 120273 0.67 0.427276
Target:  5'- -uGGCUcGCCUCcGGCaaGGCUGccGGCGCg -3'
miRNA:   3'- guCCGGaCGGGGaCCG--CCGAC--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.