miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 3' -55.9 NC_005264.1 + 104038 0.66 0.937207
Target:  5'- cGCGCGCCGcgGaa--AUCgGUUUGCCg -3'
miRNA:   3'- -UGCGCGGCuaUgacaUGGgCAGACGG- -5'
24725 3' -55.9 NC_005264.1 + 17732 0.66 0.937207
Target:  5'- uGCGCGCCGcgGCgcaACCUa--UGCCa -3'
miRNA:   3'- -UGCGCGGCuaUGacaUGGGcagACGG- -5'
24725 3' -55.9 NC_005264.1 + 85916 0.66 0.937207
Target:  5'- -gGCGCUGAcuCUG-ACCgCGUCUgagGCCa -3'
miRNA:   3'- ugCGCGGCUauGACaUGG-GCAGA---CGG- -5'
24725 3' -55.9 NC_005264.1 + 73368 0.66 0.937207
Target:  5'- gACGCG-CGGUGCUuuugGCgCGgcUCUGCCa -3'
miRNA:   3'- -UGCGCgGCUAUGAca--UGgGC--AGACGG- -5'
24725 3' -55.9 NC_005264.1 + 127428 0.66 0.937207
Target:  5'- -aGCuGCCGGaGCUGUugUUGUCgagguugaUGCCa -3'
miRNA:   3'- ugCG-CGGCUaUGACAugGGCAG--------ACGG- -5'
24725 3' -55.9 NC_005264.1 + 133592 0.66 0.937207
Target:  5'- uGCGCGCCGcagucuccGCUGUGCUCcUCgaccGCUg -3'
miRNA:   3'- -UGCGCGGCua------UGACAUGGGcAGa---CGG- -5'
24725 3' -55.9 NC_005264.1 + 8401 0.66 0.937207
Target:  5'- -aGCuGCCGGaGCUGUugUUGUCgagguugaUGCCa -3'
miRNA:   3'- ugCG-CGGCUaUGACAugGGCAG--------ACGG- -5'
24725 3' -55.9 NC_005264.1 + 29265 0.66 0.937207
Target:  5'- gGCGCGCaGAUuguuggACUGUGCgCGggcgCgUGCCu -3'
miRNA:   3'- -UGCGCGgCUA------UGACAUGgGCa---G-ACGG- -5'
24725 3' -55.9 NC_005264.1 + 132214 0.66 0.932303
Target:  5'- uACGCGCUGcgcGCgg-AUCCGUCgccGCCg -3'
miRNA:   3'- -UGCGCGGCua-UGacaUGGGCAGa--CGG- -5'
24725 3' -55.9 NC_005264.1 + 96075 0.66 0.932303
Target:  5'- uCGCGCgGc--CUGUAUCCGUUgcggcuacuguUGCCg -3'
miRNA:   3'- uGCGCGgCuauGACAUGGGCAG-----------ACGG- -5'
24725 3' -55.9 NC_005264.1 + 13187 0.66 0.932303
Target:  5'- uACGCGCUGcgcGCgg-AUCCGUCgccGCCg -3'
miRNA:   3'- -UGCGCGGCua-UGacaUGGGCAGa--CGG- -5'
24725 3' -55.9 NC_005264.1 + 64491 0.66 0.932303
Target:  5'- aGCGCGCCGAgAgaGUcGCCUGgaccgcgcuguUCUGUCc -3'
miRNA:   3'- -UGCGCGGCUaUgaCA-UGGGC-----------AGACGG- -5'
24725 3' -55.9 NC_005264.1 + 80580 0.66 0.927165
Target:  5'- cGCGCuCCGGUGCc--GCCUGUCgcgaGCCc -3'
miRNA:   3'- -UGCGcGGCUAUGacaUGGGCAGa---CGG- -5'
24725 3' -55.9 NC_005264.1 + 67663 0.66 0.927165
Target:  5'- -aGCGCCGGUuucgacACUGUcuACCaCGgcgGCCa -3'
miRNA:   3'- ugCGCGGCUA------UGACA--UGG-GCagaCGG- -5'
24725 3' -55.9 NC_005264.1 + 120305 0.66 0.927165
Target:  5'- gACGCGCgGAaGCUGcGCCCac--GCCa -3'
miRNA:   3'- -UGCGCGgCUaUGACaUGGGcagaCGG- -5'
24725 3' -55.9 NC_005264.1 + 128596 0.66 0.927165
Target:  5'- cGCGCGCaCGAggcgggACgaaACCCGUCcGUCu -3'
miRNA:   3'- -UGCGCG-GCUa-----UGacaUGGGCAGaCGG- -5'
24725 3' -55.9 NC_005264.1 + 120819 0.66 0.927165
Target:  5'- uGCGCGUCGAcACUGccgCCGUg-GCCg -3'
miRNA:   3'- -UGCGCGGCUaUGACaugGGCAgaCGG- -5'
24725 3' -55.9 NC_005264.1 + 105742 0.66 0.927165
Target:  5'- cGCGCGaagcaaCGGUAUUugGCCCGUCguggaaGCCc -3'
miRNA:   3'- -UGCGCg-----GCUAUGAcaUGGGCAGa-----CGG- -5'
24725 3' -55.9 NC_005264.1 + 393 0.66 0.921792
Target:  5'- -aGCGCCGGcGCggucgUGUACCUGUUcGCg -3'
miRNA:   3'- ugCGCGGCUaUG-----ACAUGGGCAGaCGg -5'
24725 3' -55.9 NC_005264.1 + 94947 0.66 0.921792
Target:  5'- uACGCGUCGGUGgUGgGCCuCG-CgGCCc -3'
miRNA:   3'- -UGCGCGGCUAUgACaUGG-GCaGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.