miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 76713 0.66 0.949947
Target:  5'- cGAGGCucauGuuGaCGCUCAuGGUGcgcGGCGCa -3'
miRNA:   3'- -CUUCGu---CugC-GCGAGUuUCAC---CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 10229 0.66 0.949947
Target:  5'- -uGGCcu-CGgGCUCAAuAGcGGGCGCg -3'
miRNA:   3'- cuUCGucuGCgCGAGUU-UCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 16544 0.66 0.949947
Target:  5'- --cGCuuGCGCGUauuUCAGcgcGGUGGGCGg -3'
miRNA:   3'- cuuCGucUGCGCG---AGUU---UCACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 162405 0.66 0.949947
Target:  5'- uAGGUacgAGACGCuagggCAGAG-GGGCGCg -3'
miRNA:   3'- cUUCG---UCUGCGcga--GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 75072 0.66 0.949947
Target:  5'- -uAGCuGACGCGgagaggCAGGGUGuGCGCu -3'
miRNA:   3'- cuUCGuCUGCGCga----GUUUCACcCGCG- -5'
24725 5' -54.6 NC_005264.1 + 43378 0.66 0.949947
Target:  5'- uAGGUacgAGACGCuagggCAGAG-GGGCGCg -3'
miRNA:   3'- cUUCG---UCUGCGcga--GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 70955 0.66 0.949947
Target:  5'- uGGAGCugccuGGGCuGuCGCUCAAAauuggaacGUGGcGCGCa -3'
miRNA:   3'- -CUUCG-----UCUG-C-GCGAGUUU--------CACC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 143202 0.66 0.94737
Target:  5'- aGAAGuCAcGACcaCGCUCAGAGggaauuguuggcgaGGGCGCc -3'
miRNA:   3'- -CUUC-GU-CUGc-GCGAGUUUCa-------------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 90442 0.66 0.945604
Target:  5'- --cGUAGAgauCGCUC-AGGUGGGCGg -3'
miRNA:   3'- cuuCGUCUgc-GCGAGuUUCACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 123653 0.66 0.945604
Target:  5'- uGAAGC-GAUGCGCggUAGAGUcGcGCGCc -3'
miRNA:   3'- -CUUCGuCUGCGCGa-GUUUCAcC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 50557 0.66 0.94102
Target:  5'- cGAAGCuAGGCGCGCgCGugcgGGaaGCGCa -3'
miRNA:   3'- -CUUCG-UCUGCGCGaGUuucaCC--CGCG- -5'
24725 5' -54.6 NC_005264.1 + 54722 0.66 0.94102
Target:  5'- gGAAGC-GugGCGCUCAc-GUGGaCGg -3'
miRNA:   3'- -CUUCGuCugCGCGAGUuuCACCcGCg -5'
24725 5' -54.6 NC_005264.1 + 26793 0.66 0.94102
Target:  5'- --uGCAcGCGgGCUUccacgaggaGAAGUGGGcCGCg -3'
miRNA:   3'- cuuCGUcUGCgCGAG---------UUUCACCC-GCG- -5'
24725 5' -54.6 NC_005264.1 + 36173 0.66 0.936194
Target:  5'- -cGGCAGGCgGCGUUUcguGGuUGGGCGa -3'
miRNA:   3'- cuUCGUCUG-CGCGAGuu-UC-ACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 47392 0.66 0.936194
Target:  5'- uAAGCgagAGugGCGCgu--GGuUGGGUGCg -3'
miRNA:   3'- cUUCG---UCugCGCGaguuUC-ACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 155200 0.66 0.936194
Target:  5'- -cGGCAGGCgGCGUUUcguGGuUGGGCGa -3'
miRNA:   3'- cuUCGUCUG-CGCGAGuu-UC-ACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 80134 0.66 0.936194
Target:  5'- aGAGCAaGuAUGCGCUauuGGGgGGGCGUa -3'
miRNA:   3'- cUUCGU-C-UGCGCGAgu-UUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 110128 0.66 0.936194
Target:  5'- aGAGCcGcCGCGCUUuuGG-GGGCGg -3'
miRNA:   3'- cUUCGuCuGCGCGAGuuUCaCCCGCg -5'
24725 5' -54.6 NC_005264.1 + 134995 0.66 0.936194
Target:  5'- uGGGCGGAUGcCGCcgCGAcAGU-GGCGCg -3'
miRNA:   3'- cUUCGUCUGC-GCGa-GUU-UCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 95467 0.66 0.936194
Target:  5'- -cGGCGGGCGCag-CGAGcGcGGGCGCu -3'
miRNA:   3'- cuUCGUCUGCGcgaGUUU-CaCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.