miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24727 5' -59.7 NC_005264.1 + 38023 0.66 0.815693
Target:  5'- gGCCUUGUUaCUggguuaGUGCGCCgcuugucaguggaaGGCGCCg -3'
miRNA:   3'- -CGGAGCAA-GGg-----CAUGCGGa-------------CCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 6563 0.66 0.81235
Target:  5'- cGCCUCG-UCCaCGgugaUGCGCCccccaGGgGCCg -3'
miRNA:   3'- -CGGAGCaAGG-GC----AUGCGGa----CCgCGGg -5'
24727 5' -59.7 NC_005264.1 + 9760 0.66 0.81235
Target:  5'- aGCCgcCGUgcUCCCaccUACGCuCUGuGCGUCCc -3'
miRNA:   3'- -CGGa-GCA--AGGGc--AUGCG-GAC-CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 125590 0.66 0.81235
Target:  5'- cGCCUCG-UCCaCGgugaUGCGCCccccaGGgGCCg -3'
miRNA:   3'- -CGGAGCaAGG-GC----AUGCGGa----CCgCGGg -5'
24727 5' -59.7 NC_005264.1 + 61001 0.66 0.81235
Target:  5'- gGCCUCGUUCUC---UGCCUcGGCuucgGCCa -3'
miRNA:   3'- -CGGAGCAAGGGcauGCGGA-CCG----CGGg -5'
24727 5' -59.7 NC_005264.1 + 110984 0.66 0.81235
Target:  5'- aGCCUCGccgaagagUCgGUgACGCCcgcgGaGCGCCCa -3'
miRNA:   3'- -CGGAGCaa------GGgCA-UGCGGa---C-CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 26350 0.66 0.807291
Target:  5'- aCCUUagUCuuGUGCGCCgcggcaggcugcgcGGCGCCg -3'
miRNA:   3'- cGGAGcaAGggCAUGCGGa-------------CCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 97639 0.66 0.803888
Target:  5'- aGCCgcagagcaaaCGUUgCCGUgaaaGCGCUgacucaUGGCGCCUc -3'
miRNA:   3'- -CGGa---------GCAAgGGCA----UGCGG------ACCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 134505 0.66 0.803888
Target:  5'- cGCC-CGcuaCCCGUACGCCgccgcaaaGauacucaaagacGCGCCCg -3'
miRNA:   3'- -CGGaGCaa-GGGCAUGCGGa-------C------------CGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 57962 0.66 0.803888
Target:  5'- gGCCU-GUUCCCGgaaaGCuGCCgcauccaaucUGGCGUUCg -3'
miRNA:   3'- -CGGAgCAAGGGCa---UG-CGG----------ACCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 129546 0.66 0.795283
Target:  5'- cGCCgagCGggUCCUGUGCGgCgc-CGCCCu -3'
miRNA:   3'- -CGGa--GCa-AGGGCAUGCgGaccGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 3556 0.66 0.795283
Target:  5'- cCCUCGUggcgucuuUCCUGgugauCGUgaGGCGUCCu -3'
miRNA:   3'- cGGAGCA--------AGGGCau---GCGgaCCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 1395 0.66 0.795283
Target:  5'- cGCgUCGcaUUCCCGUACGaccCCUGGCcgguaaguuaaGCUa -3'
miRNA:   3'- -CGgAGC--AAGGGCAUGC---GGACCG-----------CGGg -5'
24727 5' -59.7 NC_005264.1 + 60601 0.66 0.795283
Target:  5'- aGCC-CcUUCUCGUAUGCCgcGGCaGCCg -3'
miRNA:   3'- -CGGaGcAAGGGCAUGCGGa-CCG-CGGg -5'
24727 5' -59.7 NC_005264.1 + 10519 0.66 0.795283
Target:  5'- cGCCgagCGggUCCUGUGCGgCgc-CGCCCu -3'
miRNA:   3'- -CGGa--GCa-AGGGCAUGCgGaccGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 131076 0.66 0.795283
Target:  5'- cGCCcgCGaaccaUCCCgGUGCgaGCCaaaGGCGCCCc -3'
miRNA:   3'- -CGGa-GCa----AGGG-CAUG--CGGa--CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 12049 0.66 0.795283
Target:  5'- cGCCcgCGaaccaUCCCgGUGCgaGCCaaaGGCGCCCc -3'
miRNA:   3'- -CGGa-GCa----AGGG-CAUG--CGGa--CCGCGGG- -5'
24727 5' -59.7 NC_005264.1 + 156301 0.66 0.795283
Target:  5'- -aCUCGcagggucUCCCGUACGC--GGCGCUg -3'
miRNA:   3'- cgGAGCa------AGGGCAUGCGgaCCGCGGg -5'
24727 5' -59.7 NC_005264.1 + 74718 0.66 0.795283
Target:  5'- gGCCaUCag-CCCGUACGCaaccGCGCCg -3'
miRNA:   3'- -CGG-AGcaaGGGCAUGCGgac-CGCGGg -5'
24727 5' -59.7 NC_005264.1 + 131712 0.66 0.786541
Target:  5'- gGCCUgcgcggCGUUgCUG-GCGCuCUGGCGCUa -3'
miRNA:   3'- -CGGA------GCAAgGGCaUGCG-GACCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.