miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 162693 0.71 0.881577
Target:  5'- gGCGCGCuGCGCGCcGgcGUuaAGGCGGCc -3'
miRNA:   3'- aCGUGCG-CGCGCG-CuuUA--UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 160650 0.67 0.97926
Target:  5'- cGCAUGgGCGC-CGGcAAUggagGGGCAACGc -3'
miRNA:   3'- aCGUGCgCGCGcGCU-UUA----UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 159744 0.75 0.670292
Target:  5'- cUGCGCGCGaugGCaGaCGAAGUGGugGACGa -3'
miRNA:   3'- -ACGUGCGCg--CG-C-GCUUUAUCugUUGC- -5'
24729 3' -52.1 NC_005264.1 + 159669 0.66 0.982881
Target:  5'- cGCGcCGuCGCGCGCGGAgggucgccguuucgGUugccgccaGGACGAUGa -3'
miRNA:   3'- aCGU-GC-GCGCGCGCUU--------------UA--------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 159540 0.67 0.971529
Target:  5'- gGCGCGCGauccCGCGCGAGcuc-ACGACu -3'
miRNA:   3'- aCGUGCGC----GCGCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 159313 0.67 0.971529
Target:  5'- cGC-CGCGuCGCGguucgaCGAGGcGGACGGCGa -3'
miRNA:   3'- aCGuGCGC-GCGC------GCUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 157018 0.71 0.888643
Target:  5'- aGCuuuCGCGguucuUGCGCGAAAUAGAguACa -3'
miRNA:   3'- aCGu--GCGC-----GCGCGCUUUAUCUguUGc -5'
24729 3' -52.1 NC_005264.1 + 156688 0.74 0.71153
Target:  5'- gUGCACGCGaUGCGCGAc--GGGCGcGCGg -3'
miRNA:   3'- -ACGUGCGC-GCGCGCUuuaUCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 156687 0.66 0.983467
Target:  5'- uUGUACaGCcCGCGCGAGAcccaGGACGgGCGg -3'
miRNA:   3'- -ACGUG-CGcGCGCGCUUUa---UCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 155264 0.81 0.352253
Target:  5'- cGCA-GCG-GCGCGggGUAGGCGGCGg -3'
miRNA:   3'- aCGUgCGCgCGCGCuuUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 155238 0.69 0.931319
Target:  5'- cGCAUGCGCGCagaccagagcccGCGAGGUuuagGGGCGGa- -3'
miRNA:   3'- aCGUGCGCGCG------------CGCUUUA----UCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 154961 0.67 0.968542
Target:  5'- cGUACGCGCGC---AGAUGcGCAGCGa -3'
miRNA:   3'- aCGUGCGCGCGcgcUUUAUcUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 154923 0.68 0.961915
Target:  5'- gUGgACGCGCGCGUugcuagccaGAGcGUGGGgGACGu -3'
miRNA:   3'- -ACgUGCGCGCGCG---------CUU-UAUCUgUUGC- -5'
24729 3' -52.1 NC_005264.1 + 154184 0.71 0.851057
Target:  5'- aGCAUGCccgaauacuuCGCGCGAAacGUAGACGugGc -3'
miRNA:   3'- aCGUGCGc---------GCGCGCUU--UAUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 154135 0.68 0.950253
Target:  5'- gGcCACGCGCGCGCaGAGcgAGuucuuCAAgGg -3'
miRNA:   3'- aC-GUGCGCGCGCG-CUUuaUCu----GUUgC- -5'
24729 3' -52.1 NC_005264.1 + 152980 0.72 0.81723
Target:  5'- uUGCGgucuccgGCGCGgGCGAggaggagaacugGAUAGACGACGa -3'
miRNA:   3'- -ACGUg------CGCGCgCGCU------------UUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 152535 0.69 0.925965
Target:  5'- gUGCGCGuCGCuGCGCccGGUAGGCGAg- -3'
miRNA:   3'- -ACGUGC-GCG-CGCGcuUUAUCUGUUgc -5'
24729 3' -52.1 NC_005264.1 + 152228 0.66 0.986995
Target:  5'- gGCACuuaauGCcuCGCGCGAuAUGGAUcGCGg -3'
miRNA:   3'- aCGUG-----CGc-GCGCGCUuUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 150865 0.72 0.842892
Target:  5'- cGUGC-CGCGCGCGGca-AGACAugGg -3'
miRNA:   3'- aCGUGcGCGCGCGCUuuaUCUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 149885 0.73 0.761415
Target:  5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3'
miRNA:   3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.