miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 5' -55.3 NC_005264.1 + 97460 0.66 0.95634
Target:  5'- cUCCGUCGcCUGCGaGaCUCUAccCGgcGGCg -3'
miRNA:   3'- -AGGCAGCaGAUGC-C-GAGGUu-GCa-CCG- -5'
24729 5' -55.3 NC_005264.1 + 39544 0.66 0.95634
Target:  5'- gCCGcCGcCccGCGGUUCCcGCGcGGCa -3'
miRNA:   3'- aGGCaGCaGa-UGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 158571 0.66 0.95634
Target:  5'- gCCGcCGcCccGCGGUUCCcGCGcGGCa -3'
miRNA:   3'- aGGCaGCaGa-UGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 57071 0.66 0.95634
Target:  5'- gUCCGUCGUCaGCGGCg-------GGCg -3'
miRNA:   3'- -AGGCAGCAGaUGCCGagguugcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 141610 0.66 0.95634
Target:  5'- gCCGUCGUCaacGCGGaaagCCGuCGcGGCc -3'
miRNA:   3'- aGGCAGCAGa--UGCCga--GGUuGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 9604 0.66 0.952471
Target:  5'- cCCaugCGcCgaaGGCUCCGuaACGUGGCu -3'
miRNA:   3'- aGGca-GCaGaugCCGAGGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 34272 0.66 0.952471
Target:  5'- aUCCG-CGUgCUGC-GCUCCGccgcggaaauauACGUGGg -3'
miRNA:   3'- -AGGCaGCA-GAUGcCGAGGU------------UGCACCg -5'
24729 5' -55.3 NC_005264.1 + 2921 0.66 0.952471
Target:  5'- gUCaCGcUUGgCUGCGaGCUCCAGCGUG-Cu -3'
miRNA:   3'- -AG-GC-AGCaGAUGC-CGAGGUUGCACcG- -5'
24729 5' -55.3 NC_005264.1 + 67951 0.66 0.952471
Target:  5'- cCCGgCGcCUGCGGCUCgAGaaaGGCu -3'
miRNA:   3'- aGGCaGCaGAUGCCGAGgUUgcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 137284 0.66 0.952471
Target:  5'- uUCCGcggCGUUgGCGGCgacgCgGGCGUacGGCa -3'
miRNA:   3'- -AGGCa--GCAGaUGCCGa---GgUUGCA--CCG- -5'
24729 5' -55.3 NC_005264.1 + 56230 0.66 0.948379
Target:  5'- aCUGgcgagCGUCgcGCGGCUuuugUCGAgGUGGCg -3'
miRNA:   3'- aGGCa----GCAGa-UGCCGA----GGUUgCACCG- -5'
24729 5' -55.3 NC_005264.1 + 16774 0.66 0.948379
Target:  5'- cCCGaUCGUCgccgGCGGuCUCU---GUGGCc -3'
miRNA:   3'- aGGC-AGCAGa---UGCC-GAGGuugCACCG- -5'
24729 5' -55.3 NC_005264.1 + 62495 0.66 0.94406
Target:  5'- -gCGUCcUCUACGGCgUCCAucagaucauCGuUGGCc -3'
miRNA:   3'- agGCAGcAGAUGCCG-AGGUu--------GC-ACCG- -5'
24729 5' -55.3 NC_005264.1 + 79921 0.66 0.943615
Target:  5'- gCCGaCGUCUGCGGCggacUCCAcucucaaAUGggaguuagGGCg -3'
miRNA:   3'- aGGCaGCAGAUGCCG----AGGU-------UGCa-------CCG- -5'
24729 5' -55.3 NC_005264.1 + 159562 0.66 0.935219
Target:  5'- cCCGUCGcccagggacguggcgCUGCGGCUCCuggAGCGacaGCa -3'
miRNA:   3'- aGGCAGCa--------------GAUGCCGAGG---UUGCac-CG- -5'
24729 5' -55.3 NC_005264.1 + 40535 0.66 0.935219
Target:  5'- cCCGUCGcccagggacguggcgCUGCGGCUCCuggAGCGacaGCa -3'
miRNA:   3'- aGGCAGCa--------------GAUGCCGAGG---UUGCac-CG- -5'
24729 5' -55.3 NC_005264.1 + 138515 0.66 0.934731
Target:  5'- gCCGUUcaCUGCGGCcccUUCAACGcucGGCa -3'
miRNA:   3'- aGGCAGcaGAUGCCG---AGGUUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 62017 0.66 0.934731
Target:  5'- gCCGUCGUCccuguCGcGCUCUAGCaaGGUu -3'
miRNA:   3'- aGGCAGCAGau---GC-CGAGGUUGcaCCG- -5'
24729 5' -55.3 NC_005264.1 + 58000 0.67 0.929718
Target:  5'- gCCGUgGcUCaGCGGCcCCGGCGgacaGGCc -3'
miRNA:   3'- aGGCAgC-AGaUGCCGaGGUUGCa---CCG- -5'
24729 5' -55.3 NC_005264.1 + 93164 0.67 0.929718
Target:  5'- aCCGUCGgg-GCGccGCUCCAGacugGGCg -3'
miRNA:   3'- aGGCAGCagaUGC--CGAGGUUgca-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.