miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 25555 0.66 0.828324
Target:  5'- --gCGCUUGUCGCGCuCGUC-CAGGg -3'
miRNA:   3'- gagGUGAACGGCGCGuGCGGuGUCUa -5'
24731 3' -58.1 NC_005264.1 + 24336 0.66 0.828324
Target:  5'- uCUUCGCgagUGaaauCGCGCGgcaacCGCCGCAGGUa -3'
miRNA:   3'- -GAGGUGa--ACg---GCGCGU-----GCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 46551 0.66 0.828324
Target:  5'- -gCCACagccguaGCCGCcCGCGCCACGGc- -3'
miRNA:   3'- gaGGUGaa-----CGGCGcGUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 122780 0.66 0.828324
Target:  5'- -gCCuCUUGCCGCcgGgGCGCUGCGGGc -3'
miRNA:   3'- gaGGuGAACGGCG--CgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 3754 0.66 0.828324
Target:  5'- -gCCuCUUGCCGCcgGgGCGCUGCGGGc -3'
miRNA:   3'- gaGGuGAACGGCG--CgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 29975 0.66 0.823264
Target:  5'- gUCCGCgucccugGCCGCuggcaacguugauguGUguagaGCGCCGCAGAUg -3'
miRNA:   3'- gAGGUGaa-----CGGCG---------------CG-----UGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 27038 0.66 0.819857
Target:  5'- uCUCCACUgugGaaaCGCGUAgCGCCACccAGGc -3'
miRNA:   3'- -GAGGUGAa--Cg--GCGCGU-GCGGUG--UCUa -5'
24731 3' -58.1 NC_005264.1 + 58742 0.66 0.811221
Target:  5'- aUCCGCg-GCCGcCGCuGCGCUAuCAGAg -3'
miRNA:   3'- gAGGUGaaCGGC-GCG-UGCGGU-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 113034 0.66 0.811221
Target:  5'- uUCCGCg-GCCGCGaCugGgCCGCGGc- -3'
miRNA:   3'- gAGGUGaaCGGCGC-GugC-GGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 61801 0.66 0.811221
Target:  5'- gCUCCACcggGCCGCggGCAuCGCCggGCAGu- -3'
miRNA:   3'- -GAGGUGaa-CGGCG--CGU-GCGG--UGUCua -5'
24731 3' -58.1 NC_005264.1 + 48695 0.66 0.811221
Target:  5'- gUCUGCUcGUCGCGguCGCuCGCGGGa -3'
miRNA:   3'- gAGGUGAaCGGCGCguGCG-GUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 29783 0.66 0.811221
Target:  5'- gUCgGCuUUGCgagccagaaacaCGCGCAcCGCCGCGGAa -3'
miRNA:   3'- gAGgUG-AACG------------GCGCGU-GCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 44794 0.66 0.811221
Target:  5'- -gCCGac-GCCGCGguCGCCGCGGc- -3'
miRNA:   3'- gaGGUgaaCGGCGCguGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 134787 0.66 0.808598
Target:  5'- uUCCGCgcgcuuuuacccggcGUCGCGCGCGCCGgaAGAc -3'
miRNA:   3'- gAGGUGaa-------------CGGCGCGUGCGGUg-UCUa -5'
24731 3' -58.1 NC_005264.1 + 31231 0.66 0.802423
Target:  5'- uCUCCGCgcgcGCCcaCGCGCGCCGCu--- -3'
miRNA:   3'- -GAGGUGaa--CGGc-GCGUGCGGUGucua -5'
24731 3' -58.1 NC_005264.1 + 6889 0.66 0.802423
Target:  5'- gUCCGCgaGCCGCGCAgucccaGCgCGCGGc- -3'
miRNA:   3'- gAGGUGaaCGGCGCGUg-----CG-GUGUCua -5'
24731 3' -58.1 NC_005264.1 + 104529 0.66 0.802423
Target:  5'- cCUUCGCgggcaGCCGgcgaaGCGCGCCAuCAGAg -3'
miRNA:   3'- -GAGGUGaa---CGGCg----CGUGCGGU-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 118674 0.66 0.793473
Target:  5'- aCUCCACaUGCCauuuacGCGguUGCCcuGCGGGUg -3'
miRNA:   3'- -GAGGUGaACGG------CGCguGCGG--UGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 157309 0.66 0.793473
Target:  5'- -cCCGCU--CCGCGCgagACGCCGCGGc- -3'
miRNA:   3'- gaGGUGAacGGCGCG---UGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 144292 0.66 0.793473
Target:  5'- gCUCCgACUgacGCCG-GCGCGCCcuCAGGg -3'
miRNA:   3'- -GAGG-UGAa--CGGCgCGUGCGGu-GUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.