miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 162815 0.66 0.950982
Target:  5'- aCAGCUAgGGCCGCgGCGuuauggcguGCCg---- -3'
miRNA:   3'- gGUUGGUgCCGGCGgCGU---------UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 162588 0.67 0.927411
Target:  5'- uUCuGCCGCGuccagcGCCGCCGCAcaaACCUc--- -3'
miRNA:   3'- -GGuUGGUGC------CGGCGGCGU---UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 161639 0.69 0.884401
Target:  5'- gCAGCCAUGGCCGCgGaCGcCCg---- -3'
miRNA:   3'- gGUUGGUGCCGGCGgC-GUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 160361 0.7 0.846905
Target:  5'- gCCGACCAUcGUCGaaGCAGCCgcgAAGg -3'
miRNA:   3'- -GGUUGGUGcCGGCggCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 160121 0.69 0.87733
Target:  5'- aCgGGCC-CGGCCGCgGgCGGCCUa--- -3'
miRNA:   3'- -GgUUGGuGCCGGCGgC-GUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 157003 0.68 0.921979
Target:  5'- aUAACCGCGGCCaggcgaGUgGCGGCCa---- -3'
miRNA:   3'- gGUUGGUGCCGG------CGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 156744 0.68 0.897862
Target:  5'- aCAGaCAUGGCCGCCGUAAUg--AAGg -3'
miRNA:   3'- gGUUgGUGCCGGCGGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 156612 0.67 0.937554
Target:  5'- gCAAgucUCGCGGCgGCCGCGGCgg-GGGg -3'
miRNA:   3'- gGUU---GGUGCCGgCGGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 156592 0.67 0.927411
Target:  5'- aCCAGacugaggauCCGCggGGCCGCCGCAgaACCc---- -3'
miRNA:   3'- -GGUU---------GGUG--CCGGCGGCGU--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 156581 0.68 0.910396
Target:  5'- cCCGACgGCGGCgaCGaCCGCGACg--GAGg -3'
miRNA:   3'- -GGUUGgUGCCG--GC-GGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 156410 0.66 0.968789
Target:  5'- gCCAGCgAC-GCCGCCGCGAg------ -3'
miRNA:   3'- -GGUUGgUGcCGGCGGCGUUggaauuc -5'
24731 5' -54.2 NC_005264.1 + 155676 0.66 0.965665
Target:  5'- cCCGACCcgugcgggAUGGaCCugGCCGCGACCa---- -3'
miRNA:   3'- -GGUUGG--------UGCC-GG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 155480 0.7 0.830492
Target:  5'- -aAACCGCGGCgGCCGCcaGAUUUUGc- -3'
miRNA:   3'- ggUUGGUGCCGgCGGCG--UUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 154779 0.66 0.962327
Target:  5'- cCCGACUGCGGCCGCgaCGUGGgUgaaGAGg -3'
miRNA:   3'- -GGUUGGUGCCGGCG--GCGUUgGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 154493 0.67 0.942267
Target:  5'- aUCAGCgACGGUCGCCcccucaAACCcUAGGg -3'
miRNA:   3'- -GGUUGgUGCCGGCGGcg----UUGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 154068 0.66 0.950982
Target:  5'- aCAACCGC-GCCGCCGUAgagGCUc---- -3'
miRNA:   3'- gGUUGGUGcCGGCGGCGU---UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 153498 0.69 0.87733
Target:  5'- gCCGGCaaaACGGCgGCCGCc-CCUggcgGGGa -3'
miRNA:   3'- -GGUUGg--UGCCGgCGGCGuuGGAa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 152967 0.66 0.954991
Target:  5'- -aGGCCGUGGCgCGCCGgGACCg---- -3'
miRNA:   3'- ggUUGGUGCCG-GCGGCgUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 151842 0.66 0.954991
Target:  5'- -aGACUggGGCCGCCGCu-CCg---- -3'
miRNA:   3'- ggUUGGugCCGGCGGCGuuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 151417 0.73 0.688992
Target:  5'- gCGGCCgGCGuCCGCCGCGACUUUGu- -3'
miRNA:   3'- gGUUGG-UGCcGGCGGCGUUGGAAUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.