miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 3290 0.66 0.996637
Target:  5'- -cGCCAGAguCGUGAgcucgCGCGggaUCGCGc -3'
miRNA:   3'- uuCGGUUUguGCGCUa----GUGCa--AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 33627 0.66 0.996637
Target:  5'- cGGCCAGAUugGCGGcgACGguuggUCgACGg -3'
miRNA:   3'- uUCGGUUUGugCGCUagUGCa----AG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 91368 0.66 0.996044
Target:  5'- cAGUCaAAACGCGCGAgagguugugCACGUUagGCGa -3'
miRNA:   3'- uUCGG-UUUGUGCGCUa--------GUGCAAg-UGC- -5'
24733 5' -50.4 NC_005264.1 + 151847 0.66 0.99598
Target:  5'- gGGGCCGccgcuccggcggcGACACGUGGgggGCGUcuUCGCGg -3'
miRNA:   3'- -UUCGGU-------------UUGUGCGCUag-UGCA--AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 84923 0.66 0.995649
Target:  5'- aGAGCCAGGCGCGgGAcaaagcguauuuaACGUcCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCgCUag-----------UGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 72025 0.66 0.995368
Target:  5'- cGGCCGccACACGCGAg-ACGUgcugaccuccaUCGCGg -3'
miRNA:   3'- uUCGGUu-UGUGCGCUagUGCA-----------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 159987 0.66 0.994601
Target:  5'- cAGCCGcAGCGgGCGAcggCGCGagCGCGa -3'
miRNA:   3'- uUCGGU-UUGUgCGCUa--GUGCaaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 77989 0.66 0.994601
Target:  5'- cGAGauaCGAAgGcCGCGAUCGCGggcgaUCACGu -3'
miRNA:   3'- -UUCg--GUUUgU-GCGCUAGUGCa----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 60249 0.66 0.994601
Target:  5'- -cGCCAugUAUGCGGUCACGcgaGCu -3'
miRNA:   3'- uuCGGUuuGUGCGCUAGUGCaagUGc -5'
24733 5' -50.4 NC_005264.1 + 6894 0.66 0.994601
Target:  5'- cGAGCCGcgcagucccAGCGCGCGGcuuUC-CGUgggCGCGa -3'
miRNA:   3'- -UUCGGU---------UUGUGCGCU---AGuGCAa--GUGC- -5'
24733 5' -50.4 NC_005264.1 + 49759 0.66 0.994601
Target:  5'- gGAGUCAGACaccacuACGCGAggCAUGUccgucUCGCGu -3'
miRNA:   3'- -UUCGGUUUG------UGCGCUa-GUGCA-----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 40960 0.66 0.994601
Target:  5'- cAGCCGcAGCGgGCGAcggCGCGagCGCGa -3'
miRNA:   3'- uUCGGU-UUGUgCGCUa--GUGCaaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 37966 0.66 0.993734
Target:  5'- uAGCCAGuuGCGCGG-CACGUg-GCGu -3'
miRNA:   3'- uUCGGUUugUGCGCUaGUGCAagUGC- -5'
24733 5' -50.4 NC_005264.1 + 27298 0.66 0.993734
Target:  5'- aGAGCCAggUACGCGAaauCGUUugUugGg -3'
miRNA:   3'- -UUCGGUuuGUGCGCUaguGCAA--GugC- -5'
24733 5' -50.4 NC_005264.1 + 20521 0.66 0.993734
Target:  5'- gAAGCCAGggGCACGCGuugCGCccGUUgCAUGg -3'
miRNA:   3'- -UUCGGUU--UGUGCGCua-GUG--CAA-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 114692 0.66 0.993734
Target:  5'- -cGCCGAGCaggauuGCGCGGUCuCGUgCGCc -3'
miRNA:   3'- uuCGGUUUG------UGCGCUAGuGCAaGUGc -5'
24733 5' -50.4 NC_005264.1 + 119211 0.66 0.993734
Target:  5'- cGAGCguAACGCGCGAcCACGcgaggUUugGc -3'
miRNA:   3'- -UUCGguUUGUGCGCUaGUGCa----AGugC- -5'
24733 5' -50.4 NC_005264.1 + 153364 0.66 0.993734
Target:  5'- cGGCagacaAGACGCGCGAa-GCGUUgCGCGa -3'
miRNA:   3'- uUCGg----UUUGUGCGCUagUGCAA-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 74095 0.66 0.993734
Target:  5'- uGGUCGuacAugGCGCGGUCgACGcugUCGCGg -3'
miRNA:   3'- uUCGGU---UugUGCGCUAG-UGCa--AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 88242 0.66 0.993734
Target:  5'- gGGGUCAGGCGCGgGGUCAuCGUagaucguaggCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCgCUAGU-GCAa---------GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.