miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 107060 0.66 0.983171
Target:  5'- -cGCGGAGCGUGGUuaaGCAgacUCagCGCGa -3'
miRNA:   3'- acCGUCUCGCGCUA---UGUau-AGa-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 156631 0.66 0.983171
Target:  5'- cGGCGGGGgGUcaaaggACGcGUCUCGCa -3'
miRNA:   3'- aCCGUCUCgCGcua---UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 17367 0.66 0.983171
Target:  5'- cUGGCGGcGGCGCGGUcUGUGUacgUGCGc -3'
miRNA:   3'- -ACCGUC-UCGCGCUAuGUAUAga-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 83899 0.66 0.983171
Target:  5'- cGGUGGAGCGU---GC-UAUCUCuGCGa -3'
miRNA:   3'- aCCGUCUCGCGcuaUGuAUAGAG-CGC- -5'
24734 3' -52.6 NC_005264.1 + 37604 0.66 0.983171
Target:  5'- cGGCGGGGgGUcaaaggACGcGUCUCGCa -3'
miRNA:   3'- aCCGUCUCgCGcua---UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 87064 0.66 0.98134
Target:  5'- aGGC-GAGCGCGAacgagaaccagccacACAgc-CUCGCGg -3'
miRNA:   3'- aCCGuCUCGCGCUa--------------UGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 4483 0.66 0.981128
Target:  5'- cGGaaaccgucaaGGGGCGCGGUGCGgccgCUUGUGu -3'
miRNA:   3'- aCCg---------UCUCGCGCUAUGUaua-GAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 124429 0.66 0.981128
Target:  5'- -cGCAGAGCGCG-UGC---UC-CGCGg -3'
miRNA:   3'- acCGUCUCGCGCuAUGuauAGaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 44970 0.66 0.979816
Target:  5'- gUGGUAGAGCGgCGGUACGaagagggcgagcCUgGCGa -3'
miRNA:   3'- -ACCGUCUCGC-GCUAUGUaua---------GAgCGC- -5'
24734 3' -52.6 NC_005264.1 + 29127 0.66 0.978905
Target:  5'- aGGCuguaccugaGGAGCGCGuggccGCAUAgCUUGCa -3'
miRNA:   3'- aCCG---------UCUCGCGCua---UGUAUaGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 117007 0.66 0.978905
Target:  5'- gGGCGGucuGCGCGGcGCAUGaCgaguacagCGCGa -3'
miRNA:   3'- aCCGUCu--CGCGCUaUGUAUaGa-------GCGC- -5'
24734 3' -52.6 NC_005264.1 + 20271 0.66 0.978905
Target:  5'- gGGaCGGuGCGagaaGAUACuUGUCUgCGCGg -3'
miRNA:   3'- aCC-GUCuCGCg---CUAUGuAUAGA-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 153124 0.66 0.977482
Target:  5'- cGGCGGgcacaauggcucagcGGCGCGAaACAgcGUCgaggCGCGa -3'
miRNA:   3'- aCCGUC---------------UCGCGCUaUGUa-UAGa---GCGC- -5'
24734 3' -52.6 NC_005264.1 + 34097 0.66 0.977482
Target:  5'- cGGCGGgcacaauggcucagcGGCGCGAaACAgcGUCgaggCGCGa -3'
miRNA:   3'- aCCGUC---------------UCGCGCUaUGUa-UAGa---GCGC- -5'
24734 3' -52.6 NC_005264.1 + 71326 0.66 0.976494
Target:  5'- uUGGC-GAGUGCGcgGCAU-UCUaCGCc -3'
miRNA:   3'- -ACCGuCUCGCGCuaUGUAuAGA-GCGc -5'
24734 3' -52.6 NC_005264.1 + 79421 0.66 0.976494
Target:  5'- cGGCGGAacccagcguGgGCGGUGCGggGUCUC-CGg -3'
miRNA:   3'- aCCGUCU---------CgCGCUAUGUa-UAGAGcGC- -5'
24734 3' -52.6 NC_005264.1 + 37562 0.66 0.976494
Target:  5'- cGGCGacGAcCGCGAcggaggcgGCAaGUCUCGCGg -3'
miRNA:   3'- aCCGU--CUcGCGCUa-------UGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 73319 0.66 0.976494
Target:  5'- aGGCAGAGCGCcguGAUAUAcugga-GCGg -3'
miRNA:   3'- aCCGUCUCGCG---CUAUGUauagagCGC- -5'
24734 3' -52.6 NC_005264.1 + 156589 0.66 0.976494
Target:  5'- cGGCGacGAcCGCGAcggaggcgGCAaGUCUCGCGg -3'
miRNA:   3'- aCCGU--CUcGCGCUa-------UGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 125925 0.66 0.976494
Target:  5'- cUGGagcCAGAGCagGCGAcgaggaauuaaUACcUGUCUCGCGc -3'
miRNA:   3'- -ACC---GUCUCG--CGCU-----------AUGuAUAGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.