miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 49341 0.66 0.998784
Target:  5'- cGUGUACGAGGG-UCgc--GGUUGGCa -3'
miRNA:   3'- cCGCGUGCUUCUgAGauauUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 27758 0.66 0.998784
Target:  5'- gGGUGC-CGAucACUCUGUAc-UUGGCg -3'
miRNA:   3'- -CCGCGuGCUucUGAGAUAUucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 84814 0.66 0.998784
Target:  5'- uGGCGCACGGAGcgaaGCUCgcc--GUCauGCa -3'
miRNA:   3'- -CCGCGUGCUUC----UGAGauauuCAGc-CG- -5'
24737 5' -49.7 NC_005264.1 + 13342 0.66 0.998784
Target:  5'- aGGgGCGCGAGGAUgaac---GUCGGg -3'
miRNA:   3'- -CCgCGUGCUUCUGagauauuCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 16767 0.66 0.998784
Target:  5'- -cCGCGCGggGGCgcgCUGUucGGGcCGGa -3'
miRNA:   3'- ccGCGUGCuuCUGa--GAUA--UUCaGCCg -5'
24737 5' -49.7 NC_005264.1 + 132369 0.66 0.998784
Target:  5'- aGGgGCGCGAGGAUgaac---GUCGGg -3'
miRNA:   3'- -CCgCGUGCUUCUGagauauuCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 74895 0.66 0.998736
Target:  5'- cGGCGCACc---ACUUguuagccauGGUCGGCg -3'
miRNA:   3'- -CCGCGUGcuucUGAGauau-----UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 12146 0.66 0.99853
Target:  5'- cGGCGCugcccguuGCuGggGuCUCgucu-GUCGGCa -3'
miRNA:   3'- -CCGCG--------UG-CuuCuGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 155964 0.66 0.99853
Target:  5'- cGGCuCGCGGAcGCUCUGgcugccGUCGGg -3'
miRNA:   3'- -CCGcGUGCUUcUGAGAUauu---CAGCCg -5'
24737 5' -49.7 NC_005264.1 + 120074 0.66 0.99853
Target:  5'- uGGCGgACGccGGCUagcggGAGUCGuGCc -3'
miRNA:   3'- -CCGCgUGCuuCUGAgaua-UUCAGC-CG- -5'
24737 5' -49.7 NC_005264.1 + 45776 0.66 0.998232
Target:  5'- gGGCGCGCGGAGuggg---GAGUCGa- -3'
miRNA:   3'- -CCGCGUGCUUCugagauaUUCAGCcg -5'
24737 5' -49.7 NC_005264.1 + 81906 0.66 0.998232
Target:  5'- gGGCGgGCGAgccagcAGAacgaUCgucgcguAGUCGGCg -3'
miRNA:   3'- -CCGCgUGCU------UCUg---AGauau---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 136244 0.66 0.997885
Target:  5'- uGGCG-ACGGAcacGGCUC-AUGGGUuagCGGCg -3'
miRNA:   3'- -CCGCgUGCUU---CUGAGaUAUUCA---GCCG- -5'
24737 5' -49.7 NC_005264.1 + 17682 0.66 0.997885
Target:  5'- aGGCGCagccgaggccGCGgcGGCUCgu---GUCGGg -3'
miRNA:   3'- -CCGCG----------UGCuuCUGAGauauuCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 16846 0.66 0.997885
Target:  5'- cGCGCACGccguaGAGGCcCUcguUGAccuuGUCGGCg -3'
miRNA:   3'- cCGCGUGC-----UUCUGaGAu--AUU----CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 104640 0.66 0.997885
Target:  5'- cGCGCGCGggGAacaCUAaaauaGAGagGGCu -3'
miRNA:   3'- cCGCGUGCuuCUga-GAUa----UUCagCCG- -5'
24737 5' -49.7 NC_005264.1 + 76302 0.66 0.997848
Target:  5'- gGGCGCGgGggGGCUgcuggcucauucgCUGUAuaguaaAGUCcaugGGCg -3'
miRNA:   3'- -CCGCGUgCuuCUGA-------------GAUAU------UCAG----CCG- -5'
24737 5' -49.7 NC_005264.1 + 111260 0.67 0.997483
Target:  5'- uGCGCGgGAA-ACUCgauc-GUCGGCa -3'
miRNA:   3'- cCGCGUgCUUcUGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 118972 0.67 0.997483
Target:  5'- cGGCGacgACGAAGACgUCUuu--GcCGGCc -3'
miRNA:   3'- -CCGCg--UGCUUCUG-AGAuauuCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 150635 0.67 0.997483
Target:  5'- cGGgGCugGucGACUCUGgcuacacGGGacuucUCGGCu -3'
miRNA:   3'- -CCgCGugCuuCUGAGAUa------UUC-----AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.