miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24738 5' -55.6 NC_005264.1 + 61983 0.66 0.945617
Target:  5'- cGCGCGCCUgGUCccaugcgUCgagGGAGaacucGCCg -3'
miRNA:   3'- uCGCGCGGAgCAGaa-----AGag-CCUC-----UGG- -5'
24738 5' -55.6 NC_005264.1 + 88223 0.66 0.945617
Target:  5'- uAGCGCGCCaagaUCG-C-UUCUaCGcAGACCa -3'
miRNA:   3'- -UCGCGCGG----AGCaGaAAGA-GCcUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 150438 0.66 0.936425
Target:  5'- gGGC-CGCCUCGgggcgggagaUCUUauagCUCGacGGGACCg -3'
miRNA:   3'- -UCGcGCGGAGC----------AGAAa---GAGC--CUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 60998 0.66 0.936425
Target:  5'- cGCG-GCCUCGuucUCUgcCUCGGcuucGGCCa -3'
miRNA:   3'- uCGCgCGGAGC---AGAaaGAGCCu---CUGG- -5'
24738 5' -55.6 NC_005264.1 + 31411 0.66 0.936425
Target:  5'- gGGC-CGCCUCGgggcgggagaUCUUauagCUCGacGGGACCg -3'
miRNA:   3'- -UCGcGCGGAGC----------AGAAa---GAGC--CUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 58037 0.66 0.931479
Target:  5'- cGGCGCcCgCUCGUCUcgCgaaagaGGAGACUc -3'
miRNA:   3'- -UCGCGcG-GAGCAGAaaGag----CCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 17235 0.66 0.931479
Target:  5'- uGCGCGCCUUGUaa-UCgUCGGucGCUu -3'
miRNA:   3'- uCGCGCGGAGCAgaaAG-AGCCucUGG- -5'
24738 5' -55.6 NC_005264.1 + 56711 0.66 0.931479
Target:  5'- cGCGCgacaagcuGCCauugcucugUCGUgcCUUUCcgCGGAGGCCg -3'
miRNA:   3'- uCGCG--------CGG---------AGCA--GAAAGa-GCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 5150 0.66 0.931479
Target:  5'- gGGCGuCGCCgUCGUCg---UCGGugccGGCCu -3'
miRNA:   3'- -UCGC-GCGG-AGCAGaaagAGCCu---CUGG- -5'
24738 5' -55.6 NC_005264.1 + 124177 0.66 0.931479
Target:  5'- gGGCGuCGCCgUCGUCg---UCGGugccGGCCu -3'
miRNA:   3'- -UCGC-GCGG-AGCAGaaagAGCCu---CUGG- -5'
24738 5' -55.6 NC_005264.1 + 36894 0.66 0.927877
Target:  5'- cAGCGCGagacagguauuaauuCCUCGUCgccUCUCuGGcuccagcGGGCCg -3'
miRNA:   3'- -UCGCGC---------------GGAGCAGaa-AGAG-CC-------UCUGG- -5'
24738 5' -55.6 NC_005264.1 + 39650 0.66 0.926299
Target:  5'- cGCGCgGCCUCGUCcaaguacaaCUCuGcGAGAUCa -3'
miRNA:   3'- uCGCG-CGGAGCAGaaa------GAG-C-CUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 35188 0.66 0.926299
Target:  5'- gGGCGUccccaGCC-CGUCUagCgcCGGAGACUg -3'
miRNA:   3'- -UCGCG-----CGGaGCAGAaaGa-GCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 134040 0.66 0.920884
Target:  5'- aGGCGC-CCUUGUUUUUUaguaGGcAGGCCa -3'
miRNA:   3'- -UCGCGcGGAGCAGAAAGag--CC-UCUGG- -5'
24738 5' -55.6 NC_005264.1 + 160240 0.66 0.920884
Target:  5'- cGGCucGCGCCU--UCUccUUUGGAGACCu -3'
miRNA:   3'- -UCG--CGCGGAgcAGAaaGAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 41213 0.66 0.920884
Target:  5'- cGGCucGCGCCU--UCUccUUUGGAGACCu -3'
miRNA:   3'- -UCG--CGCGGAgcAGAaaGAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 149887 0.67 0.911733
Target:  5'- cGGCGCGCCgCccgguaggcaacggcGUCUcgaUCGGGGACg -3'
miRNA:   3'- -UCGCGCGGaG---------------CAGAaagAGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 30861 0.67 0.911733
Target:  5'- cGGCGCGCCgCccgguaggcaacggcGUCUcgaUCGGGGACg -3'
miRNA:   3'- -UCGCGCGGaG---------------CAGAaagAGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 82055 0.67 0.909352
Target:  5'- aGGCGCGCCUCcUCUagagCgCGGAcaaGAUCu -3'
miRNA:   3'- -UCGCGCGGAGcAGAaa--GaGCCU---CUGG- -5'
24738 5' -55.6 NC_005264.1 + 139150 0.67 0.903238
Target:  5'- cGCGUGCCUCGgaacUCaUCaGGAGAgCa -3'
miRNA:   3'- uCGCGCGGAGCagaaAG-AG-CCUCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.