miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 162817 0.66 0.996562
Target:  5'- aGCUAgGGCCGCGGcguuAUGGCGUgcCGGUGc -3'
miRNA:   3'- -UGAU-UCGGUGUCuu--UGCUGUA--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 159987 0.67 0.988951
Target:  5'- ---cAGCCGCAGcGGGCGACGgcgCGaGCGc -3'
miRNA:   3'- ugauUCGGUGUC-UUUGCUGUa--GC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 158976 0.67 0.987443
Target:  5'- --gGGGCCACG---GCGACcUCGGCu -3'
miRNA:   3'- ugaUUCGGUGUcuuUGCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 158406 0.81 0.432386
Target:  5'- --gAGGCCuCAGAcgauGACGACGUCGGCGa -3'
miRNA:   3'- ugaUUCGGuGUCU----UUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 157683 0.66 0.994502
Target:  5'- --cGGGCCgGCAccGACGACGaCGGCGa -3'
miRNA:   3'- ugaUUCGG-UGUcuUUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 156599 0.69 0.965879
Target:  5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3'
miRNA:   3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 153358 0.68 0.981958
Target:  5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3'
miRNA:   3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 151896 0.66 0.995961
Target:  5'- aGCUGuauGUgGCGGAGGgGACggCGGCu -3'
miRNA:   3'- -UGAUu--CGgUGUCUUUgCUGuaGCCGc -5'
24739 3' -50.5 NC_005264.1 + 149634 0.67 0.988951
Target:  5'- ---cAGCC-CGGcGACGGCggCGGCGa -3'
miRNA:   3'- ugauUCGGuGUCuUUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 149476 0.68 0.981958
Target:  5'- --gGAGCCGCGGGcccCGGC-UCGGCc -3'
miRNA:   3'- ugaUUCGGUGUCUuu-GCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 146056 0.7 0.958776
Target:  5'- cACaguGGCCACAGAGACcGC--CGGCGa -3'
miRNA:   3'- -UGau-UCGGUGUCUUUGcUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 145106 1.1 0.008656
Target:  5'- cACUAAGCCACAGAAACGACAUCGGCGg -3'
miRNA:   3'- -UGAUUCGGUGUCUUUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 140841 0.69 0.972072
Target:  5'- --aAGGCCAaaaucaAGAGGCGACGacagcCGGCGg -3'
miRNA:   3'- ugaUUCGGUg-----UCUUUGCUGUa----GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 140781 0.66 0.995277
Target:  5'- --aAAGCCguaccACGGAGGgGACAgCGGCa -3'
miRNA:   3'- ugaUUCGG-----UGUCUUUgCUGUaGCCGc -5'
24739 3' -50.5 NC_005264.1 + 138855 0.66 0.995561
Target:  5'- uCUAuGCCuucuauguccggauCGGAGACGACcauuucGUCGGCGc -3'
miRNA:   3'- uGAUuCGGu-------------GUCUUUGCUG------UAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 136518 0.7 0.95487
Target:  5'- aGCUAGGuCCGagacCGGAGACGACG-CGGaCGa -3'
miRNA:   3'- -UGAUUC-GGU----GUCUUUGCUGUaGCC-GC- -5'
24739 3' -50.5 NC_005264.1 + 136455 0.69 0.966209
Target:  5'- cGCUGAgGCCGCgcucAGAGACGGCGccgcgcagccugccgCGGCGc -3'
miRNA:   3'- -UGAUU-CGGUG----UCUUUGCUGUa--------------GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 134088 0.66 0.994502
Target:  5'- uGCUGucAGgCugGGAGACGuACAaaguuuUCGGCGc -3'
miRNA:   3'- -UGAU--UCgGugUCUUUGC-UGU------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 133350 0.67 0.990314
Target:  5'- aACUaGAGaCCGCGGcccuccucGACGAC-UCGGCGa -3'
miRNA:   3'- -UGA-UUC-GGUGUCu-------UUGCUGuAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 132872 0.68 0.977412
Target:  5'- ---cGGCCAgGGAcGCgGACAUUGGCa -3'
miRNA:   3'- ugauUCGGUgUCUuUG-CUGUAGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.