miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 86202 0.66 0.662996
Target:  5'- uCG-GCCUCGAUggucuucucugcgugCUCGUGGGCgGCCGa -3'
miRNA:   3'- -GCaCGGAGCUG---------------GGGCGUCCGgUGGCg -5'
24741 3' -62.9 NC_005264.1 + 122032 0.66 0.659141
Target:  5'- --aGUCUCggcGACCCCGCGgcaagcGGCUccgcucucggcGCCGCg -3'
miRNA:   3'- gcaCGGAG---CUGGGGCGU------CCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 146769 0.66 0.659141
Target:  5'- aGUGCUcgcagUGugUUCGCAGGUCauauaGCCGCu -3'
miRNA:   3'- gCACGGa----GCugGGGCGUCCGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 121511 0.66 0.659141
Target:  5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3'
miRNA:   3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 2484 0.66 0.659141
Target:  5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3'
miRNA:   3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 126330 0.66 0.64949
Target:  5'- --cGCC-CG-CCUCGUcgAGGCCGCgCGCu -3'
miRNA:   3'- gcaCGGaGCuGGGGCG--UCCGGUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 75226 0.66 0.64949
Target:  5'- -uUGCCUCuGGCgCgGcCAGGUCGuCCGCg -3'
miRNA:   3'- gcACGGAG-CUGgGgC-GUCCGGU-GGCG- -5'
24741 3' -62.9 NC_005264.1 + 90973 0.66 0.64949
Target:  5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3'
miRNA:   3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 87714 0.66 0.64949
Target:  5'- -aUGCCgaGGCCuuGguGGCUuucaucGCCGCa -3'
miRNA:   3'- gcACGGagCUGGggCguCCGG------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 42346 0.66 0.64949
Target:  5'- --gGCCUCGcCCCCGCca-CCuacuCCGCg -3'
miRNA:   3'- gcaCGGAGCuGGGGCGuccGGu---GGCG- -5'
24741 3' -62.9 NC_005264.1 + 32910 0.66 0.64949
Target:  5'- gCGU-UCUCGAUCgcgcaggggUCGCGGGgCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCUGG---------GGCGUCCgGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 14183 0.66 0.643692
Target:  5'- --cGCCUCGguggcgaucgccgucGCCCCaucGGCCACgGCg -3'
miRNA:   3'- gcaCGGAGC---------------UGGGGcguCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 68251 0.66 0.639826
Target:  5'- -aUGCC-CG-CgCCGCGGGCgGCCuGCu -3'
miRNA:   3'- gcACGGaGCuGgGGCGUCCGgUGG-CG- -5'
24741 3' -62.9 NC_005264.1 + 121190 0.66 0.639826
Target:  5'- aCGU-CCUUaGACCCgGCcGcGCUGCCGCa -3'
miRNA:   3'- -GCAcGGAG-CUGGGgCGuC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 67463 0.66 0.639826
Target:  5'- gCG-GCCagcUCGugaaaCCCGaggcCGGGCCGCCGCc -3'
miRNA:   3'- -GCaCGG---AGCug---GGGC----GUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 109948 0.66 0.639826
Target:  5'- --cGCCgaccuuaCGGCCCUGCugauGGCaggUACCGCg -3'
miRNA:   3'- gcaCGGa------GCUGGGGCGu---CCG---GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 145165 0.66 0.638859
Target:  5'- gCG-GCCUCGGCUgCGCcugAGGCUACgauauacaauuggCGCg -3'
miRNA:   3'- -GCaCGGAGCUGGgGCG---UCCGGUG-------------GCG- -5'
24741 3' -62.9 NC_005264.1 + 76954 0.66 0.630157
Target:  5'- aCGagGCCUuucaCGGCCUCGguGGUCACaaGCa -3'
miRNA:   3'- -GCa-CGGA----GCUGGGGCguCCGGUGg-CG- -5'
24741 3' -62.9 NC_005264.1 + 65448 0.66 0.630157
Target:  5'- --cGUUUUGACUCUGCAcGGCCugCGg -3'
miRNA:   3'- gcaCGGAGCUGGGGCGU-CCGGugGCg -5'
24741 3' -62.9 NC_005264.1 + 101397 0.66 0.630157
Target:  5'- --aGCaaCUCGGCgCCgaggaGCGGGCCGCCGa -3'
miRNA:   3'- gcaCG--GAGCUGgGG-----CGUCCGGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.