miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 40182 0.66 0.981285
Target:  5'- uCGCgaCGAAugUCAgCGCGCcCGCCcucGCg -3'
miRNA:   3'- -GCGa-GCUUugAGU-GCGCGuGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 42988 0.66 0.981285
Target:  5'- aGCucgUCGAGGCaUAUGCaGCACGgCUGCg -3'
miRNA:   3'- gCG---AGCUUUGaGUGCG-CGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 159209 0.66 0.981285
Target:  5'- uCGCgaCGAAugUCAgCGCGCcCGCCcucGCg -3'
miRNA:   3'- -GCGa-GCUUugAGU-GCGCGuGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 56753 0.66 0.981285
Target:  5'- gGC-CGAGAUUgGCaCGCACGCCa-- -3'
miRNA:   3'- gCGaGCUUUGAgUGcGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 25940 0.66 0.981285
Target:  5'- uGCaCGAcgGGCUCACGUaCGCGCCcACu -3'
miRNA:   3'- gCGaGCU--UUGAGUGCGcGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 129270 0.66 0.981285
Target:  5'- gGCUCcgcuacCUCGCGCGCAauaaacgaACUUACg -3'
miRNA:   3'- gCGAGcuuu--GAGUGCGCGUg-------UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 148873 0.66 0.981285
Target:  5'- aGCguaCGcauCUUugGCGCGCGCUUAUc -3'
miRNA:   3'- gCGa--GCuuuGAGugCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 67088 0.66 0.981285
Target:  5'- uGUUCGAGGaaaUCua-CGCGCGCCUAUg -3'
miRNA:   3'- gCGAGCUUUg--AGugcGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 159558 0.66 0.979087
Target:  5'- aGCUCacGACUCugGCGCugaaugccCACCcACc -3'
miRNA:   3'- gCGAGcuUUGAGugCGCGu-------GUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 148296 0.66 0.979087
Target:  5'- -uCUgGAGACcgcgCGCGUGCGCGCCg-- -3'
miRNA:   3'- gcGAgCUUUGa---GUGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 94108 0.66 0.979087
Target:  5'- cCGCcCGAggUUCugGCGC-CGCUg-- -3'
miRNA:   3'- -GCGaGCUuuGAGugCGCGuGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 116828 0.66 0.978857
Target:  5'- gGUUCGAGuauggcccagaacAC-UugGCGUACGCUUGCg -3'
miRNA:   3'- gCGAGCUU-------------UGaGugCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 146326 0.66 0.976704
Target:  5'- aGCUauccuGACUCucgGCGUGCGCGCCgaaugACg -3'
miRNA:   3'- gCGAgcu--UUGAG---UGCGCGUGUGGa----UG- -5'
24743 3' -52.9 NC_005264.1 + 65727 0.66 0.976704
Target:  5'- aGCUCaGAGGC-CAacuCGCGCugGCCg-- -3'
miRNA:   3'- gCGAG-CUUUGaGU---GCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 79117 0.66 0.976704
Target:  5'- aGCUCGgcACg-GCgGCGUGCGCUUGCc -3'
miRNA:   3'- gCGAGCuuUGagUG-CGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 7913 0.66 0.976704
Target:  5'- aCGCUCu-GGCUagcaACGCGCGCGuCC-ACg -3'
miRNA:   3'- -GCGAGcuUUGAg---UGCGCGUGU-GGaUG- -5'
24743 3' -52.9 NC_005264.1 + 22452 0.66 0.976704
Target:  5'- aCGCUuCGAAugU-ACGCGCAUAUUggGCg -3'
miRNA:   3'- -GCGA-GCUUugAgUGCGCGUGUGGa-UG- -5'
24743 3' -52.9 NC_005264.1 + 82248 0.66 0.974127
Target:  5'- uGCuuUCGggGCUCGCGacagGCGgCACCggaGCg -3'
miRNA:   3'- gCG--AGCuuUGAGUGCg---CGU-GUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 76449 0.66 0.974127
Target:  5'- -uCUCGAAGgaCACGCuGCGCAaCUGCu -3'
miRNA:   3'- gcGAGCUUUgaGUGCG-CGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 108502 0.66 0.974127
Target:  5'- gGCUCGccAUaaACGcCGCGCGCUUACu -3'
miRNA:   3'- gCGAGCuuUGagUGC-GCGUGUGGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.