miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 5' -57.3 NC_005264.1 + 35146 0.66 0.887086
Target:  5'- ---cUUCCC-CGGCCUggcCGCGGUg-- -3'
miRNA:   3'- guaaAAGGGuGCCGGGa--GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 82178 0.66 0.88641
Target:  5'- ------gCCAUGGCCCUCuugaagaGCGGC-CGu -3'
miRNA:   3'- guaaaagGGUGCCGGGAG-------CGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 93235 0.66 0.880232
Target:  5'- ---gUUCUCACGccgggcggcGCCCUCGuCGGCgCGu -3'
miRNA:   3'- guaaAAGGGUGC---------CGGGAGC-GCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 107711 0.66 0.880232
Target:  5'- aCAg---CgCACGGCggggugucgaacCCUCGUGGCUUGg -3'
miRNA:   3'- -GUaaaaGgGUGCCG------------GGAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 17355 0.66 0.880232
Target:  5'- ----cUUCCGCGGCagCUgGCGGCggcgCGg -3'
miRNA:   3'- guaaaAGGGUGCCGg-GAgCGCCGa---GC- -5'
24748 5' -57.3 NC_005264.1 + 113031 0.66 0.880232
Target:  5'- --cUUUUCCGCGGCCgCgacugggcCGCGGCg-- -3'
miRNA:   3'- guaAAAGGGUGCCGG-Ga-------GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 155934 0.66 0.876017
Target:  5'- -----gCCCACGGaaagCCgcgcgcugggacugCGCGGCUCGc -3'
miRNA:   3'- guaaaaGGGUGCCg---GGa-------------GCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 79557 0.66 0.873164
Target:  5'- ------aCCGCGGCaaggCCUUGCGGC-CGa -3'
miRNA:   3'- guaaaagGGUGCCG----GGAGCGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 146362 0.66 0.873164
Target:  5'- -----cCCCGCaGGCCaC-CGCGGCUgCGu -3'
miRNA:   3'- guaaaaGGGUG-CCGG-GaGCGCCGA-GC- -5'
24748 5' -57.3 NC_005264.1 + 118044 0.66 0.873164
Target:  5'- --gUUUgCCGCGGCgaC-CGCGGCgUCGg -3'
miRNA:   3'- guaAAAgGGUGCCGg-GaGCGCCG-AGC- -5'
24748 5' -57.3 NC_005264.1 + 149152 0.66 0.865887
Target:  5'- aGUUcUCCCugGGCCaUgGCGGUUa- -3'
miRNA:   3'- gUAAaAGGGugCCGGgAgCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 156505 0.66 0.857647
Target:  5'- ----gUCCCGCGuaucgcacaGCUacgggggCUCGCGGCUCa -3'
miRNA:   3'- guaaaAGGGUGC---------CGG-------GAGCGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 37478 0.66 0.857647
Target:  5'- ----gUCCCGCGuaucgcacaGCUacgggggCUCGCGGCUCa -3'
miRNA:   3'- guaaaAGGGUGC---------CGG-------GAGCGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 137283 0.67 0.842855
Target:  5'- ----aUUCCGCGGCgUUgGCGGCgacgCGg -3'
miRNA:   3'- guaaaAGGGUGCCGgGAgCGCCGa---GC- -5'
24748 5' -57.3 NC_005264.1 + 59038 0.67 0.842855
Target:  5'- -----cCCCGCGGUCC-CGCcGCUUGu -3'
miRNA:   3'- guaaaaGGGUGCCGGGaGCGcCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 61490 0.67 0.842855
Target:  5'- -----gCCgACGcGCCC-CGCGGuCUCGg -3'
miRNA:   3'- guaaaaGGgUGC-CGGGaGCGCC-GAGC- -5'
24748 5' -57.3 NC_005264.1 + 42911 0.67 0.826563
Target:  5'- -----cCCCGCGGCCCgcgacaCGgGGC-CGu -3'
miRNA:   3'- guaaaaGGGUGCCGGGa-----GCgCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 122043 0.67 0.826563
Target:  5'- -----cCCCGCGGCaa--GCGGCUCc -3'
miRNA:   3'- guaaaaGGGUGCCGggagCGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 146405 0.67 0.809585
Target:  5'- -----aCCCGCgggcaGGCCC-CGCGGCagUCGa -3'
miRNA:   3'- guaaaaGGGUG-----CCGGGaGCGCCG--AGC- -5'
24748 5' -57.3 NC_005264.1 + 159011 0.67 0.809585
Target:  5'- gUAUUUccUCCUGCGGCCC-CGCccgGGCcCGa -3'
miRNA:   3'- -GUAAA--AGGGUGCCGGGaGCG---CCGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.