miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 3' -52.9 NC_005264.1 + 130268 0.66 0.982751
Target:  5'- gCGGGUGCgcgacguuGCGGCGgCUacCGCGGCa -3'
miRNA:   3'- -GCUCAUGaaucu---CGCUGC-GA--GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 82308 0.66 0.981117
Target:  5'- --cGUACUguuugGGGGCGACGaCguugcgcacCGCGGCg -3'
miRNA:   3'- gcuCAUGAa----UCUCGCUGC-Ga--------GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 79382 0.66 0.980691
Target:  5'- cCGAGuUACUUcagaaccgccgcGGGCGugGCgaggcCGCGGCg -3'
miRNA:   3'- -GCUC-AUGAAu-----------CUCGCugCGa----GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 128699 0.66 0.978915
Target:  5'- gCGAGgcCUUGGgggaGGCGG-GCUCGCGcCu -3'
miRNA:   3'- -GCUCauGAAUC----UCGCUgCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 98673 0.66 0.978915
Target:  5'- -cAGUGCU---GGCGGCGCUUGC-ACa -3'
miRNA:   3'- gcUCAUGAaucUCGCUGCGAGCGcUG- -5'
24751 3' -52.9 NC_005264.1 + 9672 0.66 0.978915
Target:  5'- gCGAGgcCUUGGgggaGGCGG-GCUCGCGcCu -3'
miRNA:   3'- -GCUCauGAAUC----UCGCUgCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 19905 0.66 0.976528
Target:  5'- uCGGGUGCUUuguGGUGGCGC-CGUGcCa -3'
miRNA:   3'- -GCUCAUGAAuc-UCGCUGCGaGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 106295 0.66 0.973949
Target:  5'- gGAGaaguCggAGAGCGACaGCU-GCGGCg -3'
miRNA:   3'- gCUCau--GaaUCUCGCUG-CGAgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 100536 0.66 0.973949
Target:  5'- gCGGGU-CUaguccGGA-CGACGCUCGCGGg -3'
miRNA:   3'- -GCUCAuGAa----UCUcGCUGCGAGCGCUg -5'
24751 3' -52.9 NC_005264.1 + 135556 0.67 0.97117
Target:  5'- gCGAugACUUucgAGAagccgcGCGuCGCUCGCGACu -3'
miRNA:   3'- -GCUcaUGAA---UCU------CGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 150808 0.67 0.97117
Target:  5'- gCGGGcGCUUcgccuaAGGGCGGCGgUCGCcGCc -3'
miRNA:   3'- -GCUCaUGAA------UCUCGCUGCgAGCGcUG- -5'
24751 3' -52.9 NC_005264.1 + 4860 0.67 0.97117
Target:  5'- aGAGUuaucCUUAGAGCuuGGCGgCaaGCGACa -3'
miRNA:   3'- gCUCAu---GAAUCUCG--CUGC-GagCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 77423 0.67 0.97117
Target:  5'- gCGAcgACgu-GAGgGugGUUCGCGACc -3'
miRNA:   3'- -GCUcaUGaauCUCgCugCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 31782 0.67 0.97117
Target:  5'- gCGGGcGCUUcgccuaAGGGCGGCGgUCGCcGCc -3'
miRNA:   3'- -GCUCaUGAA------UCUCGCUGCgAGCGcUG- -5'
24751 3' -52.9 NC_005264.1 + 39269 0.67 0.97117
Target:  5'- cCGAG-ACUUGGcGCGACGC-CGaaGACc -3'
miRNA:   3'- -GCUCaUGAAUCuCGCUGCGaGCg-CUG- -5'
24751 3' -52.9 NC_005264.1 + 17933 0.67 0.97117
Target:  5'- ----cGCUUAGAaaGACcagGCUCGCGACa -3'
miRNA:   3'- gcucaUGAAUCUcgCUG---CGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 75925 0.67 0.97117
Target:  5'- uGGGUAgUUAGgaucggacAGCGugGUcucuaUCGCGGCc -3'
miRNA:   3'- gCUCAUgAAUC--------UCGCugCG-----AGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 4077 0.67 0.97117
Target:  5'- gCGGG-GCUguugcacGGGCGGCG-UCGCGGCa -3'
miRNA:   3'- -GCUCaUGAau-----CUCGCUGCgAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 123104 0.67 0.97117
Target:  5'- gCGGG-GCUguugcacGGGCGGCG-UCGCGGCa -3'
miRNA:   3'- -GCUCaUGAau-----CUCGCUGCgAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 158296 0.67 0.97117
Target:  5'- cCGAG-ACUUGGcGCGACGC-CGaaGACc -3'
miRNA:   3'- -GCUCaUGAAUCuCGCUGCGaGCg-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.