miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 3' -52.9 NC_005264.1 + 5687 0.69 0.914441
Target:  5'- aCGAGUAC--AGAGCGcgcgggcaACGCcUgGCGGCg -3'
miRNA:   3'- -GCUCAUGaaUCUCGC--------UGCG-AgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 156014 0.68 0.931123
Target:  5'- -aGGUACgcccGGCGACGCUUGCG-Cg -3'
miRNA:   3'- gcUCAUGaaucUCGCUGCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 5326 0.68 0.954053
Target:  5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3'
miRNA:   3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5'
24751 3' -52.9 NC_005264.1 + 103706 0.72 0.772457
Target:  5'- uGAGgGCcagUGGAGCGGCGg-CGCGGCa -3'
miRNA:   3'- gCUCaUGa--AUCUCGCUGCgaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 13555 0.69 0.920247
Target:  5'- aGAGg----AGAGCGGCGCgggCGgGACc -3'
miRNA:   3'- gCUCaugaaUCUCGCUGCGa--GCgCUG- -5'
24751 3' -52.9 NC_005264.1 + 125642 0.68 0.954053
Target:  5'- gGAGUcCaUGGAGCGGCGCcguaaaaugcgUCuGCGGCc -3'
miRNA:   3'- gCUCAuGaAUCUCGCUGCG-----------AG-CGCUG- -5'
24751 3' -52.9 NC_005264.1 + 96877 0.72 0.781884
Target:  5'- aCGAGUAUUgaagaUGGcauGGCGGCGCgcgagggCGCGGCa -3'
miRNA:   3'- -GCUCAUGA-----AUC---UCGCUGCGa------GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 7915 0.67 0.957925
Target:  5'- gGAGUACUggGGGGaCGuaACGCUgcCGCGAg -3'
miRNA:   3'- gCUCAUGAa-UCUC-GC--UGCGA--GCGCUg -5'
24751 3' -52.9 NC_005264.1 + 59745 0.7 0.895571
Target:  5'- aGAGU-CaUGGGGCGGCGgCU-GCGACg -3'
miRNA:   3'- gCUCAuGaAUCUCGCUGC-GAgCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 34960 1.11 0.004841
Target:  5'- gCGAGUACUUAGAGCGACGCUCGCGACg -3'
miRNA:   3'- -GCUCAUGAAUCUCGCUGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 56909 0.67 0.964985
Target:  5'- gCGAGcAUUaUGGGGCGGCGUacgugCGUGGCg -3'
miRNA:   3'- -GCUCaUGA-AUCUCGCUGCGa----GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 35494 0.68 0.945604
Target:  5'- aGGGgACgac-GGCGACGC-CGCGGCg -3'
miRNA:   3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 101876 0.68 0.949947
Target:  5'- cCGAG-ACaaUGGAGUGGCugaaGUUCGCGGCg -3'
miRNA:   3'- -GCUCaUGa-AUCUCGCUG----CGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 124353 0.68 0.954053
Target:  5'- gGAGUACggGGAGaCGAagcgguCGCUCGUcccgGGCg -3'
miRNA:   3'- gCUCAUGaaUCUC-GCU------GCGAGCG----CUG- -5'
24751 3' -52.9 NC_005264.1 + 123104 0.67 0.97117
Target:  5'- gCGGG-GCUguugcacGGGCGGCG-UCGCGGCa -3'
miRNA:   3'- -GCUCaUGAau-----CUCGCUGCgAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 19905 0.66 0.976528
Target:  5'- uCGGGUGCUUuguGGUGGCGC-CGUGcCa -3'
miRNA:   3'- -GCUCAUGAAuc-UCGCUGCGaGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 127840 0.7 0.895571
Target:  5'- -----uCUUcGAGCGcCGCUCGCGGCa -3'
miRNA:   3'- gcucauGAAuCUCGCuGCGAGCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 128699 0.66 0.978915
Target:  5'- gCGAGgcCUUGGgggaGGCGG-GCUCGCGcCu -3'
miRNA:   3'- -GCUCauGAAUC----UCGCUgCGAGCGCuG- -5'
24751 3' -52.9 NC_005264.1 + 82308 0.66 0.981117
Target:  5'- --cGUACUguuugGGGGCGACGaCguugcgcacCGCGGCg -3'
miRNA:   3'- gcuCAUGAa----UCUCGCUGC-Ga--------GCGCUG- -5'
24751 3' -52.9 NC_005264.1 + 154521 0.68 0.945604
Target:  5'- aGGGgACgac-GGCGACGC-CGCGGCg -3'
miRNA:   3'- gCUCaUGaaucUCGCUGCGaGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.