miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 8477 0.66 0.849928
Target:  5'- cAGCUGGGuccccaagcAgCAGagUGgGCCGGCGCa- -3'
miRNA:   3'- -UCGACUU---------UgGUCa-ACgCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 62043 0.66 0.849928
Target:  5'- aGGUUcGGAGCCuGcUGCGCCaGGCGUg- -3'
miRNA:   3'- -UCGA-CUUUGGuCaACGCGG-CCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 13098 0.66 0.849928
Target:  5'- aGGCUc--GCCuc-UGCccGCCGGCGCCAc -3'
miRNA:   3'- -UCGAcuuUGGucaACG--CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 127392 0.66 0.849928
Target:  5'- cGCUGAuGCUuaccgGCGCCGGaCGCg- -3'
miRNA:   3'- uCGACUuUGGucaa-CGCGGCC-GCGgu -5'
24752 3' -57.6 NC_005264.1 + 92514 0.66 0.849928
Target:  5'- gAGUUGAcgGACuCGGUcagcGCGCCGGCGg-- -3'
miRNA:   3'- -UCGACU--UUG-GUCAa---CGCGGCCGCggu -5'
24752 3' -57.6 NC_005264.1 + 81771 0.66 0.849928
Target:  5'- cGGC--AGACCGGUUGcCGUCGauaaaccacGCGCCAg -3'
miRNA:   3'- -UCGacUUUGGUCAAC-GCGGC---------CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 8365 0.66 0.849928
Target:  5'- cGCUGAuGCUuaccgGCGCCGGaCGCg- -3'
miRNA:   3'- uCGACUuUGGucaa-CGCGGCC-GCGgu -5'
24752 3' -57.6 NC_005264.1 + 104045 0.66 0.847551
Target:  5'- cGCgGAAAUCGGUuugccgacauccucUGCGCCGaccaccgcgcguGCGCCu -3'
miRNA:   3'- uCGaCUUUGGUCA--------------ACGCGGC------------CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 150063 0.66 0.841936
Target:  5'- aGGCau-GACCGcaucGUUGUGcCCGGCGCUg -3'
miRNA:   3'- -UCGacuUUGGU----CAACGC-GGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 136182 0.66 0.841936
Target:  5'- -uUUGucguuCUAGcgcgGCGCCGGCGCCGc -3'
miRNA:   3'- ucGACuuu--GGUCaa--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 48629 0.66 0.833753
Target:  5'- cGCUucAAACC--UUGCGCgGGUGCCAu -3'
miRNA:   3'- uCGAc-UUUGGucAACGCGgCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 78511 0.66 0.833753
Target:  5'- cGgUGAGGCCAGUaaccaucGCGCCGuGC-CCGg -3'
miRNA:   3'- uCgACUUUGGUCAa------CGCGGC-CGcGGU- -5'
24752 3' -57.6 NC_005264.1 + 21529 0.66 0.828756
Target:  5'- cGCUGGGacagcACCGGgcgaccguuuauggUGUucuccgaggacGCCGGCGCCGa -3'
miRNA:   3'- uCGACUU-----UGGUCa-------------ACG-----------CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 154949 0.66 0.826233
Target:  5'- cGGCgagGAGACCuccgacgccgcaucuGggGCGCCGaCGCCGc -3'
miRNA:   3'- -UCGa--CUUUGGu--------------CaaCGCGGCcGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 155989 0.66 0.825389
Target:  5'- cGCac-GACagaGGUUgcGCGCUGGCGCCAu -3'
miRNA:   3'- uCGacuUUGg--UCAA--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 64328 0.66 0.825389
Target:  5'- aAGaCUGAGGCCccc--CGUCGGCGCCu -3'
miRNA:   3'- -UC-GACUUUGGucaacGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 36962 0.66 0.825389
Target:  5'- cGCac-GACagaGGUUgcGCGCUGGCGCCAu -3'
miRNA:   3'- uCGacuUUGg--UCAA--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 120039 0.66 0.816849
Target:  5'- cGGCgGGAACCGGUUuuaccuauucCGCCGGCcguaacugGCCAc -3'
miRNA:   3'- -UCGaCUUUGGUCAAc---------GCGGCCG--------CGGU- -5'
24752 3' -57.6 NC_005264.1 + 1012 0.66 0.816849
Target:  5'- cGGCgGGAACCGGUUuuaccuauucCGCCGGCcguaacugGCCAc -3'
miRNA:   3'- -UCGaCUUUGGUCAAc---------GCGGCCG--------CGGU- -5'
24752 3' -57.6 NC_005264.1 + 26642 0.67 0.808143
Target:  5'- ----aGAACCuuagcgcgGCGCCGGCGCCGc -3'
miRNA:   3'- ucgacUUUGGucaa----CGCGGCCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.