miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 5' -51.2 NC_005264.1 + 25987 0.66 0.994523
Target:  5'- -aUAACCUCGGCAGaCGgguACAGUaUCGGc -3'
miRNA:   3'- uaGUUGGAGCUGUU-GU---UGUCGaGGCC- -5'
24752 5' -51.2 NC_005264.1 + 61779 0.66 0.994523
Target:  5'- -gCGACCcugaUCGACucgAGCAGCUCCa- -3'
miRNA:   3'- uaGUUGG----AGCUGuugUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 156890 0.66 0.994523
Target:  5'- cGUCAACa--GGCAACGccGCGGgUUCGGg -3'
miRNA:   3'- -UAGUUGgagCUGUUGU--UGUCgAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 75717 0.66 0.99444
Target:  5'- -aCGAUCUCGGCGuACAgcgcgugGCAGUUgCGGu -3'
miRNA:   3'- uaGUUGGAGCUGU-UGU-------UGUCGAgGCC- -5'
24752 5' -51.2 NC_005264.1 + 35056 0.66 0.993655
Target:  5'- cGUCAGCCUaGACAACAACcuGGuCUUCu- -3'
miRNA:   3'- -UAGUUGGAgCUGUUGUUG--UC-GAGGcc -5'
24752 5' -51.2 NC_005264.1 + 3983 0.66 0.993655
Target:  5'- uGUUAGCCgcuUCGGCGGCGGCGGguuCUCUGu -3'
miRNA:   3'- -UAGUUGG---AGCUGUUGUUGUC---GAGGCc -5'
24752 5' -51.2 NC_005264.1 + 151178 0.66 0.993655
Target:  5'- gGUCGaauugcGCgaCGACGACAGCAGCccugCCGc -3'
miRNA:   3'- -UAGU------UGgaGCUGUUGUUGUCGa---GGCc -5'
24752 5' -51.2 NC_005264.1 + 15599 0.66 0.993655
Target:  5'- gAUUGAUCUUGACGAU--CAGCUCCc- -3'
miRNA:   3'- -UAGUUGGAGCUGUUGuuGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 118609 0.66 0.993655
Target:  5'- -gCGACUUCGcCGcgcuugaaggGgAACAGCUCUGGg -3'
miRNA:   3'- uaGUUGGAGCuGU----------UgUUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 117041 0.66 0.993655
Target:  5'- gAUCAGCg-CGGCGGCccagaccgcaauAGCcGCUCCGGc -3'
miRNA:   3'- -UAGUUGgaGCUGUUG------------UUGuCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 106508 0.66 0.993468
Target:  5'- uAUCAACgaggcggugcgCGACGGCGGCAGCgcggCCGcGg -3'
miRNA:   3'- -UAGUUGga---------GCUGUUGUUGUCGa---GGC-C- -5'
24752 5' -51.2 NC_005264.1 + 121524 0.66 0.992679
Target:  5'- gGUCGgcggGCCUCGcGCGACuuCAGCg-CGGg -3'
miRNA:   3'- -UAGU----UGGAGC-UGUUGuuGUCGagGCC- -5'
24752 5' -51.2 NC_005264.1 + 111103 0.66 0.992679
Target:  5'- uUUAAUUacUGGCAACGcCGGCUCCGGc -3'
miRNA:   3'- uAGUUGGa-GCUGUUGUuGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 103739 0.66 0.992679
Target:  5'- cGUUAACCagCGcCAACGACAGUUUCa- -3'
miRNA:   3'- -UAGUUGGa-GCuGUUGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 138672 0.66 0.992679
Target:  5'- -cCGACCgCGGCcGCAGCAGCcUCGa -3'
miRNA:   3'- uaGUUGGaGCUGuUGUUGUCGaGGCc -5'
24752 5' -51.2 NC_005264.1 + 146758 0.66 0.992679
Target:  5'- --gGACC-CGGCAACAGCAaGCgCCGc -3'
miRNA:   3'- uagUUGGaGCUGUUGUUGU-CGaGGCc -5'
24752 5' -51.2 NC_005264.1 + 71508 0.66 0.992679
Target:  5'- -cCAGCCUUcACAGCcaaccGCAGCgccUCCGGu -3'
miRNA:   3'- uaGUUGGAGcUGUUGu----UGUCG---AGGCC- -5'
24752 5' -51.2 NC_005264.1 + 2497 0.66 0.992679
Target:  5'- gGUCGgcggGCCUCGcGCGACuuCAGCg-CGGg -3'
miRNA:   3'- -UAGU----UGGAGC-UGUUGuuGUCGagGCC- -5'
24752 5' -51.2 NC_005264.1 + 69041 0.66 0.992679
Target:  5'- aGUCGAUCUCuuUGGCcGCGGCcgCCGGg -3'
miRNA:   3'- -UAGUUGGAGcuGUUGuUGUCGa-GGCC- -5'
24752 5' -51.2 NC_005264.1 + 19174 0.66 0.991589
Target:  5'- -aCAACCagGAU---GAUGGCUCCGGg -3'
miRNA:   3'- uaGUUGGagCUGuugUUGUCGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.