miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24754 3' -61.8 NC_005264.1 + 134804 0.66 0.698754
Target:  5'- cGGCGucGCGCgc--GCCGGAagaccucccGCCCCCg -3'
miRNA:   3'- -CUGCucCGCGaggaCGGCUU---------CGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 110837 0.66 0.698754
Target:  5'- aGCGGGGuCGCUCCgcGCgCGAcGUCCgCa -3'
miRNA:   3'- cUGCUCC-GCGAGGa-CG-GCUuCGGGgG- -5'
24754 3' -61.8 NC_005264.1 + 159929 0.66 0.698754
Target:  5'- cGGCGAcuccGuCGCUCUcGCCGucGCCCUCc -3'
miRNA:   3'- -CUGCUc---C-GCGAGGaCGGCuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 160454 0.66 0.698754
Target:  5'- cGGCGccGgGCUCCUGCgGGcgacGGCCaCUCg -3'
miRNA:   3'- -CUGCucCgCGAGGACGgCU----UCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 133710 0.66 0.698754
Target:  5'- cGCGcacuGGUGCUgCCUcugGCCGAcAGCCCUUg -3'
miRNA:   3'- cUGCu---CCGCGA-GGA---CGGCU-UCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 41427 0.66 0.698754
Target:  5'- cGGCGccGgGCUCCUGCgGGcgacGGCCaCUCg -3'
miRNA:   3'- -CUGCucCgCGAGGACGgCU----UCGG-GGG- -5'
24754 3' -61.8 NC_005264.1 + 162083 0.66 0.698754
Target:  5'- cGCGuAGGgGCUCC-GCCGAAGaCCa- -3'
miRNA:   3'- cUGC-UCCgCGAGGaCGGCUUCgGGgg -5'
24754 3' -61.8 NC_005264.1 + 71327 0.66 0.689093
Target:  5'- uGGCGAGuGCGCggcauucuacgCC-GCCGAAaCCCCg -3'
miRNA:   3'- -CUGCUC-CGCGa----------GGaCGGCUUcGGGGg -5'
24754 3' -61.8 NC_005264.1 + 5216 0.66 0.679389
Target:  5'- cGGCGAGGCgaaGCUCUUcuuCCGcGGCCUCg -3'
miRNA:   3'- -CUGCUCCG---CGAGGAc--GGCuUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 131157 0.66 0.679389
Target:  5'- uGGCG-GGCaGC-CCcGCCGAgAGCCCUg -3'
miRNA:   3'- -CUGCuCCG-CGaGGaCGGCU-UCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 124243 0.66 0.679389
Target:  5'- cGGCGAGGCgaaGCUCUUcuuCCGcGGCCUCg -3'
miRNA:   3'- -CUGCUCCG---CGAGGAc--GGCuUCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 149738 0.66 0.679389
Target:  5'- aGACGAGuccGCGCUCCguucgGaauccUCGGAGCCCa- -3'
miRNA:   3'- -CUGCUC---CGCGAGGa----C-----GGCUUCGGGgg -5'
24754 3' -61.8 NC_005264.1 + 30712 0.66 0.679389
Target:  5'- aGACGAGuccGCGCUCCguucgGaauccUCGGAGCCCa- -3'
miRNA:   3'- -CUGCUC---CGCGAGGa----C-----GGCUUCGGGgg -5'
24754 3' -61.8 NC_005264.1 + 12130 0.66 0.679389
Target:  5'- uGGCG-GGCaGC-CCcGCCGAgAGCCCUg -3'
miRNA:   3'- -CUGCuCCG-CGaGGaCGGCU-UCGGGGg -5'
24754 3' -61.8 NC_005264.1 + 80999 0.66 0.669649
Target:  5'- cGACGuGGC-CUCCgccuuggugGUCGAAGCCagcggcgccuaCCCg -3'
miRNA:   3'- -CUGCuCCGcGAGGa--------CGGCUUCGG-----------GGG- -5'
24754 3' -61.8 NC_005264.1 + 154524 0.66 0.669649
Target:  5'- gGACGAcGGCGacgCCgcgGCgcaGguGCCCCCg -3'
miRNA:   3'- -CUGCU-CCGCga-GGa--CGg--CuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 23338 0.66 0.669649
Target:  5'- --aGAGGCGUUCCUGCCu-AGCgaUCg -3'
miRNA:   3'- cugCUCCGCGAGGACGGcuUCGggGG- -5'
24754 3' -61.8 NC_005264.1 + 125174 0.66 0.669649
Target:  5'- -gUGGGGCGCcgaugCCggcaaCCGAAGCCUUCa -3'
miRNA:   3'- cuGCUCCGCGa----GGac---GGCUUCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 35497 0.66 0.669649
Target:  5'- gGACGAcGGCGacgCCgcgGCgcaGguGCCCCCg -3'
miRNA:   3'- -CUGCU-CCGCga-GGa--CGg--CuuCGGGGG- -5'
24754 3' -61.8 NC_005264.1 + 127331 0.66 0.668674
Target:  5'- cGACGGGG-GCaCCUgcgccgcggcgucGCCGucGUCCCCu -3'
miRNA:   3'- -CUGCUCCgCGaGGA-------------CGGCuuCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.